Parasphingopyxis algicola: HFP57_09060
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Entry
HFP57_09060 CDS
T06669
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
palg
Parasphingopyxis algicola
Pathway
palg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFP57_09060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palg03019
]
HFP57_09060
Enzymes [BR:
palg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HFP57_09060
Messenger RNA biogenesis [BR:
palg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HFP57_09060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
QLC25157
LinkDB
All DBs
Position
complement(1829445..1830794)
Genome browser
AA seq
449 aa
AA seq
DB search
MTKFSDLGLAEPIQRALAAKEYDTPTPIQVQAIPPLLEGRDLCGIAQTGTGKTAAFALPS
LDYLSEEDVPRTPKACRMLILSPTRELASQIADNMRGYAKYLRLRIETVFGGVPVGKQKR
KLEGGVDVLVATPGRLLDLIDQRALKLDEVEIFVLDEADQMLDLGFIHDLKRIEKLLPQR
RQSLFFSATMPKNIANLADKFLYQPVKVSVAPQATTAERVDQYVTFVAQKEKQALLTMTL
RDQDIERALIFSRTKHGADRIVRFLAGAKIGAAAIHGNKSQPQREAALSAFRAGEIKYLV
ATDIAARGIDIPAVSHVFNFDMPNVPEQYVHRIGRTARAGASGIAISFVNDEDERSYLKS
IERLTGIRLEKQALPEDFIAKAAELPKAVSRGASKGAQQGNRRRPAQKERHQRDGERSEG
QGQKRRRRRRNNRNGVGQHRNAVKRQGNR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaaattttccgatctcggcctggccgaacccatccagcgtgcgcttgccgcgaag
gagtatgatacgccgacgccgatccaggtgcaggccatcccgccgctcctcgaaggccgc
gacctgtgcggtatcgcgcagaccggcacgggcaagacggcggccttcgcgctgccttcg
ctcgactatctatccgaagaggatgtgccgcgcacgcccaaggcgtgccggatgctgatc
ctctccccgacccgcgaactggcgagccagatcgcggacaatatgcgtggctatgccaaa
tatctgcgcctgcgtatcgaaacggtgttcggcggcgttcccgtcggcaagcagaaacgc
aagctcgaaggcggcgtcgacgtcctcgtcgcaacgcccggccgtctgctcgatctgatc
gatcagcgggcgctcaagctggacgaggtcgaaatcttcgtcctcgacgaagccgaccag
atgctggacctcggcttcatccatgacctgaagcggatcgagaaactcctgccgcagcgt
cggcagagcctgttcttttcggcgaccatgccgaagaacattgccaatctcgccgacaag
ttcctgtaccagccggtcaaggtatcggtcgctccgcaggcgacgaccgccgagcgcgtc
gaccagtatgtgacgttcgtcgcgcagaaggaaaagcaggcgctcctcacgatgacattg
cgcgatcaggatatcgaacgtgcgctcatattttcgcgcaccaagcatggcgcagaccgc
attgtacgctttctcgccggtgccaagatcggcgccgcggccatccatggcaacaagagc
cagccgcaacgcgaggcggcgctaagcgctttccgtgcgggtgagatcaaatatctcgtc
gcgacggatatcgccgcgcgcggcatcgacatcccggccgtcagccatgtcttcaatttc
gacatgccgaacgttcccgaacaatatgtgcaccggatcggccgtacggcacgggcaggg
gcgagcggtatcgcgatctccttcgtcaatgacgaggatgagcgctcctatctcaagtcg
atcgagcgattgaccggcatccggctcgaaaagcaggctttgcccgaagatttcatcgcc
aaggcggcggaactgcccaaggccgtatcgcgcggcgcgtcgaaaggtgcgcagcagggt
aaccgtcggcgacccgcccagaaggaacgccatcagcgcgatggcgagcggtcggaaggt
caggggcagaagcgtcgccgccggcgccgcaataatcgcaatggcgtgggccagcaccgc
aatgcggtgaagcgccagggcaaccgctag
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