Parasphingopyxis algicola: HFP57_09245
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Entry
HFP57_09245 CDS
T06669
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
palg
Parasphingopyxis algicola
Pathway
palg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFP57_09245 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palg03019
]
HFP57_09245 (pnp)
03016 Transfer RNA biogenesis [BR:
palg03016
]
HFP57_09245 (pnp)
Enzymes [BR:
palg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HFP57_09245 (pnp)
Messenger RNA biogenesis [BR:
palg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HFP57_09245 (pnp)
Transfer RNA biogenesis [BR:
palg03016
]
Prokaryotic type
tRNA degradation factors
HFP57_09245 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_2
Vip3A_N
CSD
Motif
Other DBs
NCBI-ProteinID:
QLC25190
LinkDB
All DBs
Position
1861277..1863547
Genome browser
AA seq
756 aa
AA seq
DB search
MFDVKKVETEWGGQKLTLETGRVARQADGAVLAQLGDTVVLCAVTAAKSVREGQDFFPLT
VHYQEKYSAAGRIPGGFFKREGRSTEKETLTCRLIDRPVRPLFPEGFYNEINVIAQVLSY
DGENEPDILAMVAASAALTISGLPFMGPIAAARVGYKDGEYQLNPSMDEVAEGELDLVVA
GTQNAVLMVESEAKELPEDVMLGAVMFAHEESKPVIDAIISLAEQAAKEPWELAQPEDQD
GMKQQLRDLVRDDIAAAYKLTDKSERSDALNAARDKAKEAFAEEDGQTQMTAGKVVKKLE
AEIVRGAIIKDGSRIDGRKLDEVRPIEAMVHFLPRTHGSALFTRGETQAIVTTTLGTKDA
EQMIDGLNGLSYSPFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAWRALHPVLPDAEEF
PYTIRVLSDITESNGSSSMATVCGGSLAMMDAGVPLKRPVSGIAMGLILEGDDFAVLSDI
LGDEDHLGDMDFKVAGTEKGITSLQMDIKIAGITEEIMKTALEQANGGRAHILGEMSKAL
DTTRTELSDFAPRIETMQIDKEKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKLSSSD
VNEIEAARKWIEGIVEEPEVGKVYDGKVVNIVDFGAFVNFMGQKDGLVHVSEIKNERVEK
VSDELEEGQEVKVKVLEIDGRGKVRLSMRVVDQETGEELEDTRPPREPRGDKGGRGGRGG
GGGRGRGPRRDRGDRNEDKGGKEAEAGELPEFITKD
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtaaagaaagtcgaaacggaatggggcggccagaagctgaccctcgaaacg
ggccgcgtggcccgtcaggccgacggcgcggtgctcgcgcagctcggcgacacggtggtg
ctgtgcgcagtcacggccgctaaatcggtgcgcgaagggcaggatttcttcccgctgacc
gtgcattatcaggaaaaatattcggccgccggacgcattccgggcggcttcttcaagcgc
gagggccgttccacggaaaaggaaacgctgacctgccgtcttatcgaccgcccggtccgt
ccgcttttccccgaaggcttttacaacgagatcaacgtgatcgcgcaggttctctcctat
gacggcgagaacgagccggacatccttgcgatggtcgccgcctcggccgcgctgacaatc
tccggcctgccgttcatgggcccgatcgccgccgcgcgcgtcggttacaaggatggcgag
taccagctcaacccgagcatggacgaagttgccgagggcgagctcgatctcgtggtcgcc
ggtacgcagaatgccgttctgatggtggaatcggaagcgaaagagcttcccgaagacgtc
atgctcggcgccgtcatgttcgcgcatgaggaatccaagccggtgatcgatgcgatcatc
tcgctcgcggagcaggccgcgaaggaaccctgggaactggcccagccggaagaccaggac
ggcatgaagcagcagcttcgcgatctcgtccgcgacgatatcgccgccgcctacaagctg
accgacaagtcggaacgctcggacgcgctgaatgctgcccgcgacaaggcgaaggaagcc
tttgccgaggaagacggccagacgcagatgacggccggcaaggtggtcaagaagctcgag
gccgaaatcgttcgcggcgcgatcatcaaggacggtagccgcatcgatggccgcaagctc
gacgaggttcgcccgatcgaagcgatggtccatttcctcccgcgcacgcatggatcggcc
ctgttcacccgcggcgaaacgcaggcgatcgtgacgacgacgctcggtaccaaggacgcc
gagcagatgatcgacggcctcaacggcctctcctattcgccgttcatgctccactataac
ttcccgccctattcggtcggcgaagtgggccgcttcggctttaccagccgccgcgagacc
ggtcatggcaagctcgcctggcgcgcgctccatccggtgctgcccgatgcggaggaattt
ccgtatacgatccgcgtcctgtccgacatcaccgagtccaacggctcgtcctcgatggcg
accgtctgcggcggcagcctcgcgatgatggatgccggtgtgccgctcaagcggccggtg
tccggtatcgccatgggcctgatcctcgaaggcgatgatttcgccgttctctccgacatt
cttggtgacgaggatcatctcggcgacatggacttcaaggtcgcgggtaccgagaagggc
atcacctcgctccagatggacatcaagatcgccggtatcaccgaagagatcatgaaaacc
gctctggaacaggccaatggcggccgcgctcatatcctgggcgagatgtccaaggctctc
gacaccacgcgcaccgagctttcggacttcgcgccgcggatcgagacgatgcagatcgac
aaggaaaagatccgcgacgttatcggtacgggcggcaaggtgatccgcgagatcgtcgcc
gaaacgggcgccaaggtcgatatcgacgacgaaggcgtgatcaagctgtcgtcttcggac
gtcaacgagatcgaagccgcgcgcaagtggatcgaaggcattgtcgaggaaccggaagtc
ggcaaggtttacgacggcaaggtcgtcaacatcgtcgatttcggcgcgttcgtgaatttc
atgggacagaaggacggcctcgtccatgtctcggaaatcaagaatgagcgcgtcgagaag
gtgtcggacgagctcgaggaaggccaggaagtcaaggtcaaggtcctcgagatcgatggc
cgcggcaaggtccgcctgtcgatgcgcgtcgtcgaccaggaaaccggcgaagagctagaa
gacacccgtcccccgcgcgaaccgcgcggtgacaagggtggccgtggcggacgcggcggt
ggaggcggccgtggccgtggcccacgccgggaccgcggcgaccgaaacgaggacaagggc
ggcaaggaagccgaagccggcgaactgcccgagttcatcaccaaggactaa
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