Parasphingopyxis algicola: HFP57_10860
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Entry
HFP57_10860 CDS
T06669
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
palg
Parasphingopyxis algicola
Pathway
palg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HFP57_10860 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palg03400
]
HFP57_10860 (ruvB)
Enzymes [BR:
palg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HFP57_10860 (ruvB)
DNA repair and recombination proteins [BR:
palg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HFP57_10860 (ruvB)
RecFOR pathway proteins
HFP57_10860 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
TIP49
Mg_chelatase
AAA_3
AAA_22
AAA_16
Sigma54_activat
AAA_14
AAA_18
nSTAND3
Rad17
AAA_2
TsaE
AAA_17
NTPase_1
AAA_24
NB-ARC
AAA_33
RNA_helicase
AAA_28
AAA_25
ABC_tran
NACHT
IstB_IS21
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
QLC25468
LinkDB
All DBs
Position
complement(2206490..2207512)
Genome browser
AA seq
340 aa
AA seq
DB search
MTDTDRHISPERKTEDADAALRPKTLAEFIGQKSACDNLRVFIAAAKKRSDALDHVMLFG
PPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALLTNLEDGDVLFIDEIHRLAPAV
EEILYPAMEDRALDLIIGEGPSARSVRIDLPQFTLVGATTRQGLITTPLRDRFGIPVRLT
FYSVEELELVVRRAASLLDLAITDDGAREIAARARGTPRIAGRLLRRVRDFAHVDSVKEV
DAKTADAALTRLEVDALGLDMMDRRYLTMIADIYKGGPVGVETLAAGLSEPRDTIEEVIE
PYLIQLGLVARTARGRALNVRGWKHLGLNPPKSAEDGLFD
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaccgaccgccatatctcccccgagcgcaagacggaggatgcggacgcagcg
ctgcggcccaagacgctggccgaatttatcgggcagaaatccgcgtgcgacaatctgcgc
gtctttatcgcggcggcgaagaagcggtcggatgcgctcgaccatgtcatgctgttcggg
ccgccggggctcggcaagacgaccttggcgcagatcgtcgcgcgcgagctcggcgtcgga
ttccgggcgacgtccgggccggtcatcgccaaggccggcgatctcgccgcgctcctgacc
aatctcgaggatggcgacgtcctgttcatcgacgagatccaccggctcgctccggcggtc
gaggaaatcctctatccggcgatggaggaccgggcgctcgacctgatcatcggcgagggc
ccgtcggcgcgttcggtgcggatcgacctgccgcaattcaccctggtcggcgcgacgacg
cggcaggggctgatcacgacgccgctgcgcgaccggttcggtatcccggtgcgtctgacc
ttctacagcgtcgaggagctcgaactggtggttcgccgtgccgcgagtttgcttgatctc
gccatcaccgacgatggtgcgcgcgagatcgccgcccgggcgcgcggtacgccgcggatt
gccggaaggcttctgcgccgcgtccgcgatttcgcccatgtcgacagcgtgaaggaggtc
gatgccaagaccgccgatgccgcgctcacccggctcgaggtcgacgcgcttggcctcgac
atgatggaccggcgttacctgacgatgatcgccgatatctacaaaggcggtccggtcggc
gtcgaaaccttggcggccggcctgtccgagccccgcgatacgatcgaggaggtgatcgag
ccctatctgatccagctcggcctcgtcgcgcggacggcacgggggcgggcgctcaatgtc
cgcggctggaagcatttggggctgaatccgccaaagtctgcggaagatgggctgttcgat
tag
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