Parasphingopyxis algicola: HFP57_11830
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Entry
HFP57_11830 CDS
T06669
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
palg
Parasphingopyxis algicola
Pathway
palg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFP57_11830 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palg03021
]
HFP57_11830 (rho)
03019 Messenger RNA biogenesis [BR:
palg03019
]
HFP57_11830 (rho)
Transcription machinery [BR:
palg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HFP57_11830 (rho)
Messenger RNA biogenesis [BR:
palg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HFP57_11830 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
Spore_III_AA
NACHT
AAA_22
S1CSD-TOTE-2
AAA
AAA_25
AAA_14
Fungal_virus_P2_C
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
QLC25639
LinkDB
All DBs
Position
2390078..2391334
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKQKKPAELVKMAEDLGVEGASTLRKQDLLFGILKAESENGEQIMGMGTIEVLPD
GFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRGPKDGERYFALTKVTEIN
FDDPEYLRTRVNFDNLTPLYPDEKLTLDSDDPTIKDKSARVIDIISPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVYLIVLLIDERPEEVTDMQRSVNGEVISSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVSDKRIFPALDV
GKSGTRKEELLVDKDNLAKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaagacttgaaacagaagaagccggccgagctggtcaagatggccgaggat
ctcggcgtcgagggcgcctcgaccctgcgcaagcaggacctgctgttcggcattctcaag
gccgagagcgagaatggcgaacagatcatgggcatgggcacgatcgaagtgctgcccgac
ggcttcggtttcctcagaagccccgaagcgaattacctcgccggccccgacgatatctac
gtctcgcccaaccaggtccgcaagttcggcctcaggacgggcgacaccgtcgaaggcgaa
attcgcgggcccaaggacggcgagcgctatttcgcgctgaccaaggtcaccgagatcaat
ttcgacgatcccgaatatctgcgcacgcgcgtcaatttcgacaatctgacgccgctctat
cccgacgaaaaactgacgctcgacagcgacgacccgacgatcaaggacaagtcggcgcgc
gtcatcgacatcatttcgccgcagggcaagggccagcgcgcgctgatcgtcgcgccgccg
cgcaccggtaagaccgtgctgctgcagaacatcgccaaggcgatcaccgacaaccatccc
gaagtctatctgatcgtgctgctgatcgacgagcggcccgaggaagtcaccgacatgcag
cgctcggtcaatggcgaggtcatctcctcgaccttcgacgaaccggcccagcgccacgtc
caggttgccgaaatggtgatcgaaaaggccaagcgcctcgtcgagcacaagaaggacgtg
gtgatcctgctcgactcgatcacgcgtctcggccgtgcctacaacaccgtcgtgccgagc
tcgggcaaggtgctgaccggcggtgtcgacgccaacgctttgcagcggcccaagcgcttc
ttcggcgccgcacgcaatatcgaggagggcggttcactctcgatcatcgcgactgcgctg
atcgacaccggcagccggatggacgaggttatcttcgaagagttcaagggcaccggcaac
tcggaaatcgtgctcgaccgcaaagtctccgacaagcgcatcttcccggcgctcgatgtc
ggcaagtccggcacgcgcaaggaggaactgctcgtcgacaaggacaatctcgccaagatg
tgggtcttgcgccgcatcctcatgcagatgggcaccgtcgacgcgatggagttcctgctc
gacaagatgaaggattcgaagaccaacgaggatttcttcgactcgatgaaccagtag
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