KEGG   Parasphingopyxis algicola: HFP57_12120
Entry
HFP57_12120       CDS       T06669                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
palg  Parasphingopyxis algicola
Pathway
palg03030  DNA replication
palg03410  Base excision repair
palg03420  Nucleotide excision repair
palg03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:palg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HFP57_12120 (polA)
   03410 Base excision repair
    HFP57_12120 (polA)
   03420 Nucleotide excision repair
    HFP57_12120 (polA)
   03440 Homologous recombination
    HFP57_12120 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:palg03032]
    HFP57_12120 (polA)
   03400 DNA repair and recombination proteins [BR:palg03400]
    HFP57_12120 (polA)
Enzymes [BR:palg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HFP57_12120 (polA)
DNA replication proteins [BR:palg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HFP57_12120 (polA)
DNA repair and recombination proteins [BR:palg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     HFP57_12120 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HFP57_12120 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5 DprA_N HHH_2 DNA_pol_lambd_f
Other DBs
NCBI-ProteinID: QLC25689
LinkDB
Position
complement(2446924..2449686)
AA seq 920 aa
MPEGKHLYLVDGSSYIFRAYHRLPPLTNVRGEPVGAVYGYTTMLWKLVDQLNAEEGPTHL
AVILDASAETFRNEIYDQYKANRPEPPEDLVPQFPMIRDATRAFSLPCIEELGFEADDLI
ASYSKVALRDGWKVTIVSSDKDLMQLIEPGLDLYDTMNDRKLGRDHVLDKFGVEPDKLGE
VLALMGDTSDNIPGVTGIGPKTASKLINEYGTVDAVLEAAPDMKKSKMRENLIEQADNAR
MSRVLVTLKDDVPLPEPLEDFELDGIPEAPLREFLTDHGFKSLLTRIGGDTARAEMAQHS
ETGAEEAEDEPPIDRSAYETVTEETALDRWIAEARRIGHIAVDTETDSLESVTARLVGVC
LATEPGKACYIPLGHGGGDLLGENPDQIDFDTAIAKLKPLFEDPAVLKIGHNLKYDMGVL
TQHDIVLAPIDDTIVMSFDLEAGMHGHGMDEIAQLFLGHECIKFKDLVGTGKQQISFAEV
PLDKATEYAAEDADVTLRLWKRLKPRLPVDKVTRVYELVDRPLVPVIARMECAGVKVDRE
ELARLSADFAEQMEATEKEVHEIAGEPFTIGSPKQLGEILFDKMGLKGGRKGKSGVWSTD
VNEMERLARDGEPIAQKILDWRQLSKLKSTYTDALQAEINPETGRVHTSYSLTGAQTGRL
SSTEPNLQNIPIRTEMGRKIRYAFVAEPGNVLLAADYSQIELRLAAHMADVPALKEAFEA
GEDIHNRTAQELFGEVDRDTRGKAKTINFAILYGISRWGLAGRLEITPDEAQDMIDRYFE
RFPGINQYITQTLTAAREAGFTETLFGRKTHFPRLKSKVQHERQGSERAAINAPIQGTSA
DIIKRAMARMRPALAKEGLDDVRMLLQVHDELVFELPENQVESASAVIGDVMASAAEPLV
RIDVPLAVDIGTGPSWGAAH
NT seq 2763 nt   +upstreamnt  +downstreamnt
atgcctgaggggaagcatctctatctcgtcgacggatcgagctatatttttcgcgcctat
caccggctgccgccgctgaccaatgtgcgcggcgagccggtcggcgcggtctatggctat
acgaccatgttgtggaagctcgtcgaccagctcaacgccgaggagggcccgacccatctt
gccgtgatcctcgatgcgagtgcggagactttccgcaacgagatctacgaccagtacaag
gccaaccggccggagccgcccgaggacctcgtcccgcaattcccgatgatccgcgatgcc
acgcgcgccttttcgctgccctgtatcgaggaactcgggttcgaggcggacgacctcatc
gcctcctattccaaggtggcgctccgggacggttggaaggtcacaatcgtcagttcggac
aaggatctgatgcagctgatcgaaccgggcctcgatctttatgacaccatgaacgaccgc
aagctcggccgcgatcacgtgctcgacaagttcggcgtcgagcccgacaagctcggcgag
gtgctcgcactgatgggcgacacgtcggacaatattcccggcgtcaccggtatcggcccc
aagaccgcatccaagctgatcaacgaatatggcacggtcgacgctgtcctcgaggcggcg
ccggacatgaaaaagtccaagatgcgcgaaaatctgatcgaacaggcggacaatgcccgg
atgtcccgcgtcttggtgacgctcaaggacgacgtcccgctgcccgaacctctcgaggat
ttcgaactggacgggattcccgaagcgcccttgcgcgaattcctcaccgatcatggtttc
aagtcgctgctcacccggatcggcggcgacacggcccgtgccgagatggcgcaacatagc
gaaacgggtgccgaggaggcggaggacgaaccgccgatcgaccgcagcgcctatgaaacg
gtgaccgaagaaaccgcgctcgacaggtggatcgccgaggcgcggcgcatcggccatatc
gccgtcgataccgaaacggacagtctggaatcggtgaccgcgcggctggtcggcgtgtgt
ctggccaccgagcccggcaaggcctgttacatcccgctcggccatggcggcggcgacctg
ctcggcgaaaatcccgaccagatcgatttcgataccgcgatcgccaagctcaagccgctg
ttcgaggacccggccgtcctcaagatcggccataacctcaaatatgacatgggcgtgctg
acccagcatgacatcgttcttgcgccgatcgacgatacgatcgtgatgagcttcgatctc
gaggccggaatgcacggccatggcatggacgagatcgcgcagctgttcctcggtcatgaa
tgtatcaagttcaaggacctggtcggcaccggcaagcagcagatttccttcgccgaggtg
ccgctcgacaaggcgaccgaatatgcagccgaagacgccgatgtgaccctgcggctctgg
aagcggctgaagccgcgcctgccggtcgacaaggtcacccgggtctatgagctggtcgac
cggccgctggttccggtcatcgcgcgcatggaatgcgcgggcgtcaaggtcgatcgcgag
gagctcgcgcggctgtcggccgatttcgccgagcagatggaagcgaccgagaaggaggtc
catgagattgcgggcgaacccttcaccataggcagtccgaaacagctcggcgagatcctg
ttcgacaagatgggcctgaaaggcgggcgcaaaggaaaatcgggcgtctggtcgaccgac
gtcaacgagatggagcgcctcgcccgcgacggcgagccgatcgcacagaagattctcgac
tggcgccagctgtcgaagctcaaatccacctataccgacgcgttgcaggcggagatcaac
cccgaaaccgggcgcgtccacaccagctattcgctgaccggcgcgcagaccgggcggcta
tcctcgaccgaaccgaacctccagaatatcccgatccgcaccgaaatgggccgcaagatc
cgctacgcattcgtggccgagcccggcaatgtgctgctcgccgcagattacagccagatc
gagctgcgcctcgccgcgcatatggccgatgtgccggcgctcaaggaagcgttcgaggca
ggcgaagatattcacaaccgcacggcgcaggagctgttcggcgaggtcgaccgcgatacg
cgcggcaaggcgaaaacgatcaacttcgctatattgtacgggatatcgcgctggggcctg
gccggacggctggaaatcaccccggacgaagcgcaggacatgatcgaccgctatttcgag
cgctttccgggcatcaaccaatatatcacccagacgctgaccgcggcgcgcgaggccggc
ttcaccgaaaccctgttcggccgcaagacgcatttcccgcgcctcaagagcaaggtccag
cacgagcgccaggggagcgagcgcgcggcaatcaacgcgccgatccagggaaccagcgcc
gacatcatcaagcgggccatggcgcggatgcggccggcgctcgcgaaggaagggctcgat
gacgtcagaatgctgctccaggtgcacgacgaactggtcttcgaactgcctgaaaaccaa
gtggaatcggcctcggccgtgatcggtgacgtcatggcttcagccgccgaaccgctggtc
aggatcgacgtgccgcttgccgtcgatatcggcaccggcccgagctggggcgctgcgcat
tga

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