Parasphingopyxis algicola: HFP57_12205
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Entry
HFP57_12205 CDS
T06669
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
palg
Parasphingopyxis algicola
Pathway
palg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFP57_12205 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palg03019
]
HFP57_12205 (recQ)
03400 DNA repair and recombination proteins [BR:
palg03400
]
HFP57_12205 (recQ)
Enzymes [BR:
palg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HFP57_12205 (recQ)
Messenger RNA biogenesis [BR:
palg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HFP57_12205 (recQ)
DNA repair and recombination proteins [BR:
palg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HFP57_12205 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QLC25704
LinkDB
All DBs
Position
complement(2462712..2464475)
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AA seq
587 aa
AA seq
DB search
MTDPDTILRNVFGFADFRGSQRAVIDRVMAGQHSLAVMPTGAGKSLCYQIPALARPGTAL
VISPLIALMHDQVRAAQAVGIKAATLTSADDDRAETMARFRDGALDLLYVAPERASGAGF
QDMLHQTPLALIAIDEAHCVSEWGHDFRPDYRLLRPLLDRFPDVPRLALTATADRHTRED
ILEQLGIPEEGAIIAGFDRPNIRYMIQPRAGIGRQVKALAADQPGAGIVYATSRAATEKL
AAQIAATGRSAGVYHAGLPPAERAANQAAFVASEDMVMCATIAFGMGIDKPDVRFVAHAG
IPKSIEAYYQETGRAGRDGDPAEAHLFWGAEDFVRARRRIETEIEEHRRTGERARLNALG
ALVETAGCRRAILLRHFGENPPEQCGNCDNCLNPPKAVDATETARKFLSAVYRTGQRFGM
GHVGEVLAGRENERIITLGHDRLSVFGIVDEEEEPMVKPVARALQTRDALVQTEHGGLAL
GPAARPILKGEEDVALVLPPRKSRKRRANRDANPVGDPLFDALREKRRVIAAENAVPPYV
VFHDATLREMASAKPDSLAAMARISGVGERKLATYGEDFLAVIAEFR
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcccgacacgattctccgcaatgttttcggttttgccgattttcgcggttcg
cagcgcgccgtgatcgatcgggtgatggcgggacaacacagcctcgccgtcatgccgacc
ggtgcgggcaagtcgctctgctaccagataccggcactcgcccggcccggcaccgctctc
gtcatctcaccgctgatcgccctcatgcacgatcaggtccgcgccgcgcaggcggtgggg
atcaaggccgcgaccctgacctccgccgatgacgaccgcgccgaaacgatggcgcggttt
cgcgatggtgccctcgatctcctctatgtcgcccctgaacgcgccagcggcgcgggcttt
caggacatgctgcaccagacgccgcttgccctgatcgcgatcgacgaagcgcattgcgtg
tccgaatgggggcatgatttccggcccgactatcgcttgctccggcctctgctcgatcgc
ttccccgacgtcccgcgcctcgcgctgaccgccaccgccgaccggcacacgcgcgaggat
attctcgagcagctcggcattcccgaagagggcgcgatcatcgccgggttcgaccggccc
aacatccgctacatgatccagccgcgtgcggggatcgggcgtcaggtcaaggcgctggcc
gccgaccagccgggcgcgggcatcgtctacgcgacgagccgcgccgcgaccgaaaaactc
gcggcccagatcgcggcaaccggacgatcggcgggcgtctaccatgccggcctcccgccc
gcagagcgcgcggccaatcaggcggccttcgtggcctccgaagacatggtgatgtgcgcg
acgattgccttcggcatgggaatcgacaagcccgacgtccgcttcgtcgctcatgccggc
atacccaaatcgatcgaggcctattatcaggaaaccggacgcgcggggcgggacggcgac
ccggccgaggcgcatctcttctggggcgcggaggatttcgtccgcgcgcggcggcggatc
gagaccgagatcgaggagcatcgccgcaccggcgagcgggcgcgattgaatgcactcggt
gcgctggtcgaaaccgccggctgccgccgcgcgatcctgctccggcatttcggcgagaac
ccgcccgagcaatgcggcaattgcgataattgcctcaatccgcccaaggcggtcgacgcg
accgaaaccgcgcgcaaattcctctccgcggtctaccggaccggccagcgcttcggcatg
ggccatgtcggcgaagtgctggcgggccgggagaatgaacgcatcatcactctcggtcat
gaccgcctgtcggtattcggtatcgtcgacgaggaagaggagccgatggtcaaacccgtc
gcccgcgcactccagacgcgcgacgcgctcgtccagaccgaacatggcggtctggcgctg
ggtccggcggcccgtccgatcctgaaaggcgaggaagacgtcgctttggtcctcccgccg
cggaaatcacggaaacgccgagccaatcgcgacgccaacccggtcggcgatccattgttc
gatgcgctacgcgagaaacgccgggtcatcgcggccgaaaatgccgtgccgccctatgtc
gtcttccatgacgcgactttgcgcgaaatggcgtcggcgaagcccgacagtctggccgct
atggcgcgcatatcgggcgtcggcgaacgcaagctcgccacctatggcgaggattttctc
gccgtgatcgcggagttccgctga
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