Parasphingopyxis algicola: HFP57_12950
Help
Entry
HFP57_12950 CDS
T06669
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
palg
Parasphingopyxis algicola
Pathway
palg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HFP57_12950 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palg03400
]
HFP57_12950 (uvrB)
DNA repair and recombination proteins [BR:
palg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HFP57_12950 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HFP57_12950 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_16
Kinesin
DUF87
SWI2_SNF2
AAA_22
SRP54
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
QLC25839
LinkDB
All DBs
Position
2587366..2589546
Genome browser
AA seq
726 aa
AA seq
DB search
MAIAIRTGLDEPETDSGFVPHRPARPEKAEGGKRFDLVSDYEPSGDQPTAIAELVETAKA
GEKDQVLLGVTGSGKTFTMAKVVEALQRPGLVLAPNKILAAQLYGEFKQFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRSLLERDDVLIVASVSCLYGIGS
VETYAAMTFDIRKGQSVDQRDIIRKLVSLQYKRNDAAFARGNFRVRGDNLEIFPSHYEDM
AWRVSMFGDEIEEIAEFDPLTGKKGAKLDRVRIFANSHYVTPGPTMKQAMGAIRRELEVR
LKELQDAGMLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
DNALLFVDESHQTIPQVGAMARGDHRRKLTLAEYGFRLPSCIDNRPLRFNEWDAMRPQTV
SVSATPGPWEMEQTGGVFSEQVIRPTGLIDPPVTIRPVEEQVDDCIAECRETAKKGYRTL
VTTLTKRMAEDLTEFMHEAGLRVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGL
DIPECGLVCILDADKEGFLRSETSLVQTIGRAARNVEGRVILYADRMTGSMERAIAETDR
RREKQREYNALHGITPTTIKRDIADIVAHAASKDQVTVDTGDEEVNNLVGHNLRAYIEDL
EKRMRAAAGDLEFEEAGRLRDQIRKLEADELGIPEIDQVATPKGRATEGRPGTRKMRYGK
TQRKMR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcgcgatccggaccggcctcgacgaacccgaaaccgatagcggcttcgtgccg
caccgtcccgcgcgccccgaaaaggcggaaggggggaaacgcttcgacctggtgtccgac
tatgagccctcgggcgaccagccgacggcgatcgcggaactcgtcgaaaccgctaaggcg
ggcgagaaggaccaggtgcttctgggcgtcaccgggtcgggcaagaccttcaccatggcc
aaggtggtcgaggcgttgcaaaggcccggcctcgtcctagcgccgaacaagatcctcgcc
gcgcagctctatggcgaattcaaacaattcttccccaataatgccgtcgaatatttcgtc
agctattacgactattaccagcccgaagcctatgtgccgcgctccgacacgtatatcgag
aaggagagctcggtaaacgaggcgatcgaccggatgcgccattcggcgacgcggtcgctg
ctcgagcgggacgatgtgctgatcgtcgcctcggtctcatgcctctatggcatcggctcg
gtcgaaacctatgcggcgatgaccttcgacatcaggaagggccagagcgtcgatcagcgc
gatatcatccgcaagctcgtctcgctgcagtacaagcgcaacgacgcagcctttgcgcgc
ggcaatttccgggtgcgcggcgacaatctcgaaatcttcccctcgcattatgaggatatg
gcctggcgcgtcagtatgttcggcgacgagatcgaggaaatcgccgaattcgatccgctg
acgggcaagaagggcgcgaagctcgatcgggtgcggatattcgcgaattcgcactacgtc
acgcccggcccgaccatgaaacaggcgatgggcgcgatccggcgcgagctcgaggtgcgc
ctcaaggaattgcaggatgccggcatgctgctcgaagcgcagcggctcgaacagcgcacc
aatttcgatctcgagatgatcgccgcgaccggaagctgcgcgggcatcgagaattattcg
cgcttcctgaccggccggttgcccggcgagccgccgccgacgctgttcgagtacctcccc
gacaacgccctgctcttcgtcgacgagagccatcagacgatcccgcaggtcggcgcgatg
gcgcggggcgaccatcggcgcaagctgacgctcgccgaatatggtttccgcctgccgagc
tgtatcgacaaccgaccgctgcgcttcaacgaatgggacgcgatgcgcccgcagacggtg
agcgtctccgcgacgcccggcccctgggagatggagcagacgggcggggtgttcagcgag
caagtgatccgcccgaccgggctcatcgatccgccggtcaccatccgtccggtcgaggag
caggtcgacgattgcatcgccgagtgccgcgagaccgcgaagaaaggctatcgcacgctc
gtcacgaccttgaccaagcggatggccgaagacctgaccgagttcatgcacgaggcggga
ctgcgcgtccgctatatgcattcggacgtcgagacgttggagcggatcgagctgatccgc
gatctccggctcggcgtttacgacgtgctggtcggcatcaacctgctgcgcgagggcctc
gatattccggaatgcgggctggtctgcatcctggacgccgacaaggaaggcttcctccgc
agcgaaacctcgctggtccagacgatcggccgcgccgcgcgcaatgtcgaaggccgcgtg
atcctctatgccgaccggatgaccggatcgatggaacgcgcgatcgccgaaaccgaccgc
cgccgcgagaagcagcgcgagtataacgcgctccacggcatcacgccgaccacgatcaaa
cgcgatatcgccgatatcgtcgcgcatgcggcgagcaaggatcaggtgaccgtcgatacc
ggcgacgaggaagtcaacaatctcgtcggccacaatctgcgcgcgtatatcgaagacctc
gaaaaacgcatgcgcgcggcagcgggcgatctcgagttcgaggaagcgggaaggctgcgc
gaccagatccgcaagctggaagccgacgaactgggcattcccgaaatcgaccaggtcgcc
acgcccaagggccgcgccaccgaaggccggccgggtacgcgcaagatgcgttacgggaaa
acgcagcggaagatgcggtaa
DBGET
integrated database retrieval system
