Parasphingopyxis algicola: HFP57_13400
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Entry
HFP57_13400 CDS
T06669
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
palg
Parasphingopyxis algicola
Pathway
palg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HFP57_13400 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palg03400
]
HFP57_13400 (uvrA)
DNA repair and recombination proteins [BR:
palg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HFP57_13400 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HFP57_13400 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_25
AAA_29
DnaJ_CXXCXGXG
nSTAND1
RsgA_GTPase
AAA_21
AAA_23
DUF4350
nSTAND3
CbiA
TylF
Motif
Other DBs
NCBI-ProteinID:
QLC25921
LinkDB
All DBs
Position
2682870..2685878
Genome browser
AA seq
1002 aa
AA seq
DB search
MLTKISVKGAREHNLKGVDIDLPRDKLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSA
YARQFLEMMQKPDVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARAGIPY
SPATGEPIAAQTVSQMVDRVMALPEGTRFYLLAPVVRGRKGEYRKELAEWQKAGFTRVRV
DGEFYDIEEAPALDKKFKHDIEVVVDRLVVREGMETRLADSFETAIRLADGLAYVDLADG
TVADALGKSSPSMGEGLGGGESSAGENASGKVTPPPAPPHQGEGGKGLKGAGLPDNRIVF
SEKFACPVSGFTIEEIEPRLFSFNAPQGACPACDGLGEKLEFDIELVVPNGELSLKKGAV
VPWAKSNPPSPYYMQVLASVARHFEFSLDTPWNELSEHHQDVILHGTQGLPITLSFKDGR
KSYDVKKPFEGVIGNLNRRMMQTESAWMREELGKFQTAAPCEVCGGARLKPEALAVKLGE
EDISMSARRPVGQALAWFEALPEKLNEQQSQIATPILKEIVERLGFLNNVGLDYLNLDRS
SGTLSGGESQRIRLASQIGSGLSGVLYVLDEPSIGLHQRDNDRLLATLKRLRDLGNTVIV
VEHDEDAIRHADHIVDMGPGAGVHGGEVVAQGTLAKILKSKKSLTADYLNGRKEIAVPAN
RRKGTGKKLTVKGATANNLQSVTASIPLGTFTCVTGLSGSGKSTLTIDTLYAAAARSLNG
ARIVAGKHDKLTGLEFLDKVIDIDQSPIGRTPRSNPATYTGAFTAIRDWFAGLPEAAARG
YKPGRFSFNVKGGRCEACQGDGVLKIEMHFLPDVYVTCDVCHGARYNRETLEVKFKGQSI
ADVLDMTVEDAHEFFKAVPPIRDRMAMLERVGLGYIKVGQQATTLSGGEAQRVKLSKELS
KRATGQTLYILDEPTTGLHFEDVRKLLEVLHALVEQGNTVVVIEHNLDVIKTADHILDLG
PEGGDKGGTIVAQGTPEEVAATKGSYTGEYLKGILKKAGTAA
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgaagataagcgtcaaaggcgcgcgcgagcataatctgaagggcgtcgatatc
gacctgccgcgcgacaagctgatcgtgatcacggggctgtcgggctcgggcaagtcgagc
ctcgctttcgacaccatctatgcggaagggcagcggcgctatgtcgagagcttgtccgcc
tatgcgcggcagtttctcgagatgatgcagaagcccgatgtcgagcatatcgaggggctc
tcgcccgcgatctcgatcgagcagaagacgacctcgcggaacccgcgttccaccgtcgcg
accgtcaccgagatatacgattatatgcggctgttatgggcgcgcgcgggcatcccctac
agccccgcgaccggcgagccgatcgccgcgcagaccgtcagccagatggtcgaccgggtg
atggcgctccccgagggcacgcgcttctacctgctcgcgccggtcgtgcgcggccgcaag
ggcgaatatcgcaaggagctggccgagtggcagaaggccggctttacgcgggtgcgcgtc
gacggcgagttctacgacatcgaagaagccccggcgctcgacaagaagttcaagcatgac
atcgaagtcgtggtcgaccggctcgtggtgcgcgagggcatggaaacgcggctcgcggac
agtttcgagaccgcgatccggctggccgatgggctggcttatgtggaccttgccgacggg
acggtggcggacgcacttgggaagtcctccccctcgatgggggagggtttgggtgggggt
gagtcctcggctggcgagaacgctagcggaaaagtcaccccacccccagcccctccccat
caaggagaggggggtaaaggcctgaaaggcgccggcctccccgacaaccggatcgtgttc
agcgaaaaattcgcctgcccggtctccggcttcacgatcgaggagatcgagccgcggctc
ttttcgttcaacgcgccgcagggggcctgtccggcctgcgacgggctcggcgagaagctc
gaattcgatatcgagctggtcgtgcccaatggcgagctgagcctgaaaaaaggcgcggtc
gtgccctgggccaagtccaacccgcccagcccttactatatgcaggtactcgccagcgtc
gcgcggcatttcgaattctcgctcgacacgccgtggaacgagctgagcgagcatcaccag
gacgtgatccttcacggcacgcagggcctgccgatcacgctctccttcaaggatgggcgc
aagtcgtacgacgtgaaaaagccgttcgagggcgtcatcggcaatctgaaccgccgcatg
atgcagaccgagagcgcctggatgcgcgaggagctcggcaagttccagaccgccgcgccc
tgcgaggtgtgcggcggcgcgcggctcaagcccgaggcgctggcggtgaagctcggcgaa
gaggatatctcgatgagcgcgcgccgcccggtcggccaggcgctggcctggttcgaggcg
ctgcccgaaaagctcaacgagcagcagagccagatcgccacccccatcctcaaggaaatc
gtcgagcggctgggcttcctcaacaatgtcgggttggattatctcaatctcgaccgcagc
tcgggcacgctctcgggcggcgagagccagcgcatccgcctggcgagccagataggttcg
ggcctgtccggcgtgctctacgtcctcgacgagcccagcatcggcctccatcagcgcgac
aacgaccggctcctcgccacgctcaagcgcctccgcgatctcggcaacaccgtcatcgtc
gtcgagcatgacgaagacgcgatccgccatgccgaccatatcgtcgatatgggcccgggc
gcgggcgtccatggcggcgaggtcgtcgcgcagggcacgctcgccaagatcctgaaatcg
aagaagagcctcaccgccgattatctcaacgggcgcaaggagatcgcagtccccgcaaac
cgccgcaagggcacgggcaagaagctgacggtgaagggcgcgaccgccaacaatctccag
tcggtcaccgcctcgattcccctcggcaccttcacctgcgtcaccggcctctccggctcc
ggcaaatccaccctcaccatcgacacgctctacgccgccgccgcgcgcagcttgaacggc
gcgcgcatcgtcgctggcaagcacgacaaactcaccggcctcgaatttctcgacaaggtc
atcgatatcgaccagtcgccgatcggccgcacgccccgctccaaccccgccacctatacc
ggcgccttcaccgcgatccgcgactggttcgccggcctccccgaagcagcggcgcgcggc
tacaagcccgggcgcttctcgttcaacgtcaagggcggccgctgcgaggcgtgccagggc
gacggcgtgctcaagatagagatgcacttcctgcccgatgtctatgtcacctgcgatgtc
tgccacggcgcgcgctataatcgcgaaacgctggaggtgaagttcaagggccagagcatc
gccgatgtgctcgacatgacggtcgaggatgcgcatgaattcttcaaggccgtcccgccg
atccgcgaccggatggcgatgctcgaacgcgtcgggctcggctatatcaaggtcggccag
caggcgacgacgctatcgggcggcgaggcgcagcgcgtgaagctctccaaagagctatcg
aaacgcgcgaccggccagacgctctacatcctcgacgagccgaccacggggctgcatttc
gaggatgtccgcaaactgctggaggtgctccacgcgctggtcgagcaggggaatacggtg
gttgtgatcgagcacaatctggatgtgataaaaaccgccgaccatatcctcgacctcggc
cccgaaggcggcgacaagggcgggacgattgtcgcgcaggggacgccggaggaagtggcg
gcgacgaagggcagttatacgggggagtatttgaaggggatacttaagaaagccgggaca
gcggcgtga
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