Parasphingopyxis algicola: HFP57_15250
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Entry
HFP57_15250 CDS
T06669
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
palg
Parasphingopyxis algicola
Pathway
palg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HFP57_15250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palg03021
]
HFP57_15250
03400 DNA repair and recombination proteins [BR:
palg03400
]
HFP57_15250
Enzymes [BR:
palg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HFP57_15250
Transcription machinery [BR:
palg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HFP57_15250
DNA repair and recombination proteins [BR:
palg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HFP57_15250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
TmoB
HHH_XRCC3_RpoA
IDH
Motif
Other DBs
NCBI-ProteinID:
QLC26249
LinkDB
All DBs
Position
3072281..3073354
Genome browser
AA seq
357 aa
AA seq
DB search
MSVNMKNWQELKKPNGLEKKAGGDAARKATFVAEPLERGFGLTLGNALRRTLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNIKQVAIAMESEGTKRLQLSATGPADVKAGDI
TTSGDIEIRNPDQLICHLDEGATLNMELTASTGKGYVPAAQNRPADAPIGLIPVDSLYSP
VSQVAYKVENTRVGQELDYDKLTLTIETDGTVAPEDALAYAARILQDQLQLFVHFDEELP
APTQTIGEPAAPGMLGGAAAEGDTNQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLV
QKTEAEMLRTPNFGRKSLNEIKEVLATMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgttaacatgaaaaactggcaagagctcaagaagcccaatggtctggaaaagaaa
gccggcggcgatgccgcccgcaaggcgaccttcgtcgccgagccgctcgagcgcgggttc
ggcctgacgctcggcaacgcgctgcgtcgtaccctgctctcgtcgctgcagggcgccgcg
atcacctcgatcaagatcgaaaatgtgctgcacgaattttcctcgcttgccggcgtgcgc
gaggacgtcaccgacatcgtcctcaacatcaagcaggtcgcgatcgcaatggaatcggaa
ggcacgaagcgcctccagctgtccgccaccggccccgcggatgtgaaggccggcgacatc
acgacctcgggcgatatcgagatccgcaacccggatcagctgatctgtcatctcgacgag
ggcgcgacgctcaacatggagctgaccgccagcaccggcaaaggctatgtgccggccgcg
cagaaccgtccggcggacgcgccgatcggcctgatcccggtcgacagcctctattcgccg
gtgagccaggtcgcctacaaggtcgagaacacccgcgtcgggcaggagcttgactatgac
aagctgaccctgaccatcgaaaccgacggcacggtggctccggaagatgctctggcttac
gcagcccgcatcttgcaggaccagctccagctcttcgtccatttcgacgaggaactgccg
gcaccgacccagacgatcggcgaaccggctgccccgggcatgctcggcggcgccgccgcg
gaaggcgacaccaaccagctcaaccgttaccttctcaagaaggtcgacgaactggagctt
tcggtgcgctcggccaactgcctgaagaacgacaatatcatctatattggcgatctcgtg
cagaagaccgaagccgagatgctgcggacgccgaatttcggccgcaagtcgctgaacgag
atcaaggaagtcctcgccaccatgggcttgcgcctcggcatggacatccccggctggccg
cccgagaatatcgaggaaatggccaagaagctcgaacaggaacttcttggttag
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