Parasphingopyxis algicola: HFP57_17220
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Entry
HFP57_17220 CDS
T06669
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
palg
Parasphingopyxis algicola
Pathway
palg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFP57_17220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palg03019
]
HFP57_17220
03009 Ribosome biogenesis [BR:
palg03009
]
HFP57_17220
Enzymes [BR:
palg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HFP57_17220
Messenger RNA biogenesis [BR:
palg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HFP57_17220
Ribosome biogenesis [BR:
palg03009
]
Prokaryotic type
rRNA processing factors
HFP57_17220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Zn_ribbon_Brz
Motif
Other DBs
NCBI-ProteinID:
QLC26604
LinkDB
All DBs
Position
3531236..3533707
Genome browser
AA seq
823 aa
AA seq
DB search
MATRMLIDARHREETRVAVVKNNRIEEFDFESEEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPKEDRDKLLAEEVEQAKQEAKLREDEDAEQAKEDAAESD
EEGEEPEVEETGDADADEEPQDEPSVQNIRKRRMDLRRRYKIQDVIRRRQVLLVQVVKEE
RGNKGAALTSYLSLAGRYCVLMPNTSHGGGISRKISNASDRKRLKSVISDLNLPDTMGCI
VRTAGMTRTKTEIKRDFTYLARLWDEIRDATLKATAPEKIYTDSDLIKRAIRDIYNRDIN
EVIVEGEEGYKAAKSFMKLLMPSHARRVQQYVDATPLFQRYQVEDQLAAMYQPVVQLKSG
GYLVINPTEALVSIDINSGRSTREHNIEQTALKTNIEAAREIARQLRLRDMAGLVVIDFI
DMDHRSNNRKVESALKDALKNDRARIQVGRISSFGLLEMSRQRLRTGVLEASTHECPHCE
GTGLMRTASSAGLSALRMLEEEAAKGKGSKLVLTCSRDAAVYVLNSKRKELGEIEELYGV
SIEVLPDRALEGAAMDVVASGPAPTKKVEIVPLALDDDDDDIVDEIDEEEDEQEEKPRSR
RRRGRRGGRSRRGKPKSADAESESQEKDEDETPEAGDGDGAEASRKKSRRGRRGGRRPKG
SQEAQDGETQTDDTAEAAEDASAADAPEAEKADAEAAESEKPKRRRSRKKADAEAQPEEA
KADAEPATDAEAEEKPKRAPRRRRKAEPEAAAKTPAVDTPADADETAPAEAEAAPAKPKR
SRKKPEKVNGGETVASDDAPAADESGGGDQPVRRGWWQRTFGE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgtatgctgatcgatgcgcgccaccgggaagagacccgtgtggccgtcgtc
aagaacaaccggatcgaagaatttgatttcgaatccgaagagcataaacagctcaagggc
aatatctatctagccaaggttacccgcgtcgaaccgtcgctccaggcggcatttgtcgat
tacggcggcaaccggcacggctttctcgccttcagcgaaatccatcccgattattaccag
atcccgaaagaggatcgcgacaagctgctcgccgaagaggtcgaacaggccaagcaagag
gccaagcttcgcgaggacgaagacgcggaacaggcgaaagaggatgccgcggagtccgac
gaggagggcgaggagcccgaggtcgaggaaaccggcgacgccgacgccgacgaagagccg
caggacgaaccgtcggtccagaatatccgcaagcgccggatggacctgcgccgccgctac
aagatccaggacgttattcgccgccgccaggtgctgctcgttcaggtcgtcaaggaagag
cgcggcaacaagggcgcggcgctgaccagctatctctcgctcgccggccgatactgcgtg
ctgatgcccaatacctcgcatggcggcgggatcagccggaagatttcgaacgcttcggac
cgcaagcgcctgaaatcggtcatttccgatctcaacctgcccgatacgatgggctgcatc
gtccgcaccgcgggcatgacgcggaccaagaccgagatcaaacgcgatttcacctatctc
gcccggctctgggacgaaatccgcgacgcgacactcaaggcgaccgcgccggaaaaaatc
tacaccgacagcgatctgatcaagcgcgcgatccgcgatatctacaatcgcgatatcaac
gaggtgatcgtcgaaggcgaggagggctacaaggccgccaaatccttcatgaaattgctg
atgccgagccatgcccggcgcgtgcagcaatatgtcgatgcgacgccattgttccagcgc
taccaggtcgaggaccagctcgcggcgatgtaccagcccgtcgtccagctcaaatcgggc
ggctatctggtgatcaacccgaccgaggcgctggtttcgatcgacatcaactcgggccgc
tcgacgcgcgagcacaatatcgaacagacggcgctcaagaccaatatcgaggcggcgcgc
gaaatcgcccgccagctgcgcctgcgcgacatggccgggctggtggtcatcgatttcatc
gacatggaccaccgttcgaacaaccggaaagtcgaaagcgcgctcaaggatgcgctcaag
aacgaccgggcgcggatccaggtggggcggatttcgtccttcggcctgctcgagatgagc
cgtcagcgcctgcgcaccggcgtgctcgaggcctcgacgcacgaatgcccgcattgcgaa
ggcacgggcctgatgcgcacggcctcgtcggccgggctttcggcgttgcgcatgctcgaa
gaggaagcggccaagggcaagggttcgaagctggtgctcacctgttcgcgcgacgcggcg
gtctatgtcctcaattccaaacgcaaggaactgggcgagatcgaggaactgtacggcgtt
tcgatcgaggtgctgccggatcgcgcgctcgaaggcgcggcgatggatgtcgtcgcttcg
ggccccgcgccgaccaagaaggtcgagatcgtgccgctcgcgctggatgacgatgacgac
gacattgtcgacgagatcgacgaggaagaggacgagcaggaagaaaagccccgctcgcgc
cgtcgccggggtcgccggggcggacgcagccgacgcggcaagccgaaatccgccgacgcc
gaaagcgaaagccaggagaaggacgaagacgagacgcccgaagccggcgacggcgatggc
gcggaagcgtcccgcaagaaatcgcgccggggacggcgcggcggccgtcgcccgaagggc
tcgcaggaagcgcaggacggcgaaacgcagacggacgatacggccgaggctgcggaagac
gcgtcggcggcagatgctccggaggccgagaaggctgacgcggaggcggccgaatcggag
aaacccaagcgccgccgctcgcgcaaaaaggccgatgccgaggcccagccggaagaggcg
aaggccgatgcggaaccggcgaccgacgccgaagccgaagagaagccaaaacgcgctccg
cgacgccgccgcaaggcggaacccgaggcagctgccaagaccccggcagtcgacacgccg
gccgacgccgatgaaaccgcacccgccgaagcggaagcggcgcccgccaagccgaagcgt
tcgcgcaagaagcccgaaaaggtcaatggcggcgaaacggtggccagcgacgatgcgccc
gcggccgatgaaagcggcggcggcgatcagcccgtccggcgcggctggtggcagcggacc
ttcggcgagtaa
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