Pantoea alhagi: B1H58_03170
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Entry
B1H58_03170 CDS
T05014
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
palh
Pantoea alhagi
Brite
KEGG Orthology (KO) [BR:
palh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palh03019
]
B1H58_03170
Enzymes [BR:
palh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B1H58_03170
Messenger RNA biogenesis [BR:
palh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B1H58_03170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
HA2_N
AAA_22
Cas3-like_C_2
AAA_19
ResIII
Motif
Other DBs
NCBI-ProteinID:
ARJ41097
UniProt:
A0A1W6B1Y8
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All DBs
Position
complement(670514..672955)
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AA seq
813 aa
AA seq
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MSELPVSAVLPKVLAALKQAPQVLLAAPTGAGKSTWLPLQLLQQGDIAGRIIMLEPRRLA
ARNVAQRLAEQLGEEPGATVGYRMRADSRVGPATRLEVVTEGILTRMLQQDPMLDGVGLI
ILDEFHERSLQADLALALLLDVQQGLRDDLRLLIMSATLDNARLSARLPDAPLIVSEGRS
FPVEQRYASLPTQLPFDEAVAREVAQLLREESGSLLLFLPGVGEIERVKNQLAQRVSSDI
ELCPLYGALPLAAQRRAILPAPQGKRKVVLATNIAETSLTIDGIRLVVDSALERTARFDA
RSGITRLQTQRISQASMTQRAGRAGRLSPGICLHLIAREQAERAAAQSEPEILQSDLSAL
WLDLLQWGCHDAAQLNWIDAPPASALLAAQKLLRMLGALGENGQLTVRGRAMAKLGSEPR
LAALLTAARDRDAQATAARLAAILEEPPRQGSRNLLDHLFTPHAGWQQRARQLQKRLNGA
GGQPDAMLAPTLLAQAFPDRLARRRGESGRYQLAGGPGAMLDHEDGLTRHEWLIAPQLLQ
GDTQAEARILLALPVEITKLQRDCPDLVRSETDIEWDEAKGTLRAWQRDKIGVLALKSQP
LAKPDAEVLHPAMLRWIREKGLEVLNWTPEASQVRLRLQCAAQWLPEEKWPAMDDESLLA
TLESWLLPEMSNVRDMKGLRQVSLTGALLHLLTWSQRQRLDSALPTHYTVPTGSRLPIRY
DSEKPPALAVRLQEMFGEAQNPTIAEGRVALVLELLSPAQRPLQITRDLAAFWQGAYLEV
QKEMKGRYPKHAWPDDPASALPTRRTKKYAAPQ
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgaattaccggtaagcgccgtgctgccaaaggtgctggcggcattaaaacaggcg
ccgcaggtgttgctggctgcgccgacaggcgcgggtaaatccacctggctgccgctgcag
ctgttacagcagggcgacattgccggacgcattattatgctggagccgcgtcgtctggcg
gcgcgtaatgtcgcacagcgtctggcggaacaactgggtgaagagcccggcgcaaccgtg
ggttatcgcatgcgcgccgacagtcgcgttgggcctgctacccggctggaagtggtcacc
gaaggcattctgacgcgcatgctgcaacaggatccgatgctggacggcgttgggctgatt
atccttgatgagtttcatgaacgcagtttacaggccgatctggctctggcgctgctgctc
gatgttcaacaggggctgcgcgacgatctgcgcctgttgattatgtccgctacgctggac
aatgcgcggttaagcgcacgtctgcctgatgcgccgctgattgtttccgaaggccgcagt
tttccggtagagcagcgctatgccagcctgccgacgcaactgccctttgatgaggctgtc
gcgcgtgaggtggcccagctgctgcgcgaagaaagcggttcactgctgctgtttttaccc
ggcgtgggagaaatcgagcgggtgaaaaaccagctggcgcagcgcgtcagcagcgatatt
gaactgtgtccgttatatggcgcgctgccgctggcggcgcagcggcgggcgatcctgcca
gcgccgcagggaaaacgtaaggtggtactggcgactaatatcgccgaaaccagcttaacc
attgacggcattcgtctggtggtggatagcgcgctggaacgcacggcgcgtttcgatgcg
cgcagcggcattacgcgcctgcaaacccagcgtatcagtcaggcttccatgacgcagcgc
gccggacgcgccggtcgtttatcacccggcatctgtttacatctgatcgcacgcgagcag
gcggaacgcgccgcggcgcagagcgagccggaaatcttacaaagcgatttaagcgcattg
tggctcgatttactgcagtggggatgccatgacgctgcccagctgaactggattgatgcg
ccgcccgcgtcggcgctgctggcggcgcaaaagctgctgaggatgctcggcgcgcttggt
gaaaacggtcagttgacggtacggggacgcgcaatggcgaagctgggcagcgaaccacgg
ctggcggcgttattaaccgccgcccgcgatcgggatgcgcaggcaacggccgcccggctg
gccgctatccttgaagaaccgccgcgtcagggtagccgtaatcttcttgatcatctgttt
acgccgcacgcgggctggcaacagcgcgctcgtcagttacaaaagcgattgaatggcgcg
ggcggacagccggacgcgatgctggcaccaacgctgctggcacaggcgttccccgatcgt
ctggcacgccgacggggtgaaagcggtcgctatcagctggcgggcggcccaggcgcaatg
ctcgatcatgaggatggcctgacgcggcatgaatggttgatcgcgccgcagcttcttcag
ggcgatacgcaggctgaagcacgtatcctgctggcgcttccggtagagatcacgaaactt
cagcgcgactgccccgacctggtgcgtagcgaaaccgatatcgaatgggatgaagcaaaa
ggaacgctgcgcgcctggcagcgcgataaaattggcgtgctggcgctgaaatcgcagccg
ctggcgaagccggatgcggaggtactgcatccggcgatgctgcgctggatccgcgaaaag
gggctggaagtgcttaactggacgccggaagcaagccaggtgcggctgcggctgcaatgc
gctgcgcagtggctgccggaagagaagtggccagcgatggatgatgagtcgttgctcgcc
acgctggaaagctggctgttgccggagatgagcaacgtgcgtgatatgaaaggcttgcgt
caggtgagtctgacgggcgcattattacatttgctcacatggtcacaacgccagcggctg
gatagtgcgttaccaactcattacactgtgccgaccggcagtcgtctgccgattcgctat
gatagtgaaaagccgcctgcgctggcggtgcgtctgcaggaaatgtttggcgaggcgcaa
aatccaacgattgcggaagggcgcgtggcgctggtgctggagctgttatcgcccgcgcag
cggccattgcagattacccgcgatcttgctgctttctggcagggcgcatatctggaggtg
caaaaagagatgaaaggacgctatcccaaacatgcctggcctgacgatccggccagcgcg
ttgcctacgcgtcgcaccaaaaaatatgcggcgccgcagtaa
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