Pantoea alhagi: B1H58_06500
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Entry
B1H58_06500 CDS
T05014
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
palh
Pantoea alhagi
Brite
KEGG Orthology (KO) [BR:
palh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
palh03016
]
B1H58_06500
Enzymes [BR:
palh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
B1H58_06500
Transfer RNA biogenesis [BR:
palh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
B1H58_06500
Prokaryotic type
tRNA splicing ligases
B1H58_06500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ARJ41705
UniProt:
A0A1W6B3N6
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All DBs
Position
1370440..1371663
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AA seq
407 aa
AA seq
DB search
MKPQYQVLSAPNSAPVKMWTNGVPVEPEARNQLLNTAKMPFIFKHLAVMPDVHLGKGSTI
GSVIPTRGAIIPAAVGVDIGCGMIAVRTSLAAGDLPENLYGIRSAIERTVPHGRTSNRSS
NDKGAWKRAPDIVDQHWATLQKGFRRITDKYPALLKTNNYAHLGTLGTGNHFIELCLDEA
DRVWVMLHSGSRGVGNAIGTLFIQLAQQDMRQHIANLPDRDLAWFAEGNPHFDDYIEAVG
WAQDYARHNREIMMQQVLAALSREITKPFSATAEAVNCHHNYVQREKHFGEQVLVTRKGA
VSAQRGEMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRSMSRTAAKKRFTVADQQRAT
AHVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgcaatatcaggtgttatcagcgcccaacagcgcgccggtaaaaatgtggacc
aatggcgtaccggtagaaccggaagcgcgtaatcagctgctgaatacagcaaaaatgcct
ttcatcttcaaacatctggcagtgatgcccgatgtccatttaggcaaaggttccactatc
ggcagcgttattccgacgcgtggtgccattatcccggcggcggtcggcgttgacatcggc
tgcggcatgatcgcggtgcgtacttcgctggccgctggcgacctgcccgaaaatctctac
ggcatccgcagcgccattgagcgcacggttccacatggccgcaccagcaaccgctccagc
aacgataaaggcgcctggaaacgcgcaccggatattgtggatcaacactgggccactttg
cagaagggattcaggcgcattaccgataagtatccggcgctgctgaaaaccaataattac
gcccatctaggcacgctcggcaccggcaaccattttattgaactctgcctggacgaagcg
gaccgcgtgtgggtcatgctgcacagcggctcacgtggcgtgggcaatgccatcggcacc
ctgtttattcaactggcgcagcaggatatgcgtcagcatatcgctaacctgccggatcgc
gatctcgcctggtttgctgaaggcaacccgcattttgacgactatatcgaagcggtcggc
tgggcacaggactatgcgcgtcataaccgcgaaataatgatgcagcaggtgctggcggcg
ctgtcgcgggaaatcaccaaacccttcagcgccacggcggaagcggttaactgccaccat
aactatgtgcagcgcgaaaagcattttggcgaacaggtactggtaacccgtaaaggcgca
gtatcggcccaacgcggcgagatggggattattcccggctcgatgggcgcgaaaagcttt
atcgtgcgcgggctgggcaatgaagagagcttttgctcatgcagccatggcgctgggcgc
tccatgagccgcaccgccgctaaaaaacgctttaccgttgccgaccagcagcgcgccaca
gcccatgtggagtgccgtaaagatagcgatgtgatcgatgaaattccaatggcctacaag
gatatcgatgcggtgatggcggcgcagtcttcgctggtggaaatcgtgcataccctgcgt
caggtggtctgtgttaagggataa
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