Pantoea alhagi: B1H58_08500
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Entry
B1H58_08500 CDS
T05014
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
palh
Pantoea alhagi
Pathway
palh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1H58_08500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palh03019
]
B1H58_08500
Enzymes [BR:
palh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B1H58_08500
Messenger RNA biogenesis [BR:
palh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B1H58_08500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CCDC138_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ARJ42062
UniProt:
A0A1W6B4N8
LinkDB
All DBs
Position
complement(1803522..1804814)
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AA seq
430 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAAEGRQINQPRALIMAPTRELAVQIHADAEPLAQSTGLKLGLAYG
GDGYDKQLKVLEKGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIR
WLFRRMPAANQRLSMLFSATLSYRVRELAFEHMNNVEHIEIEPDQKTGHRIQEELFYPSN
KEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTRGDVDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIEEYIGHGIPVSKYNSDALMTDLPPPKRLTRNRPGSGPRRAAGNNRRSGA
PRNNNRKRSG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaaccgaacagaagttttccgacttcgccctgcacccacaggtt
atcgaagcccttgaaaagaaaggcttccataattgtacgcctatccaggcgttagcattg
ccccttacactggaagggcgcgatgtcgcgggccaggcgcaaaccggaaccggcaaaacg
atggcgtttttaacgtcaacgttccattatttgctttctcaccctgcagccgaaggccgt
cagatcaatcagccacgcgcgctgattatggctccgacgcgcgaactggcggtacagatt
catgctgatgctgaaccactggcgcagtctaccggcctgaagctgggtctcgcctatggc
ggcgatggctatgacaaacagctaaaagtgctggaaaaaggcgtcgatatcctggtgggc
accaccggtcgcctgatcgattacgctaagcagaaccacattaacctgggcgcaattcag
gtggtggtgctggatgaggccgatcgcatgtttgatctgggcttcattaaagatattcgc
tggctgttccgccgtatgcctgcggcaaatcagcgtctgagcatgttgttctccgccacg
ctttcttatcgcgtacgcgagctggcgtttgagcatatgaacaacgtcgaacatatcgaa
atcgagccggatcagaaaacgggccaccgcattcaggaggagctgttctacccttctaat
aaagaaaagatgcgcctgctgcaaacgcttattgaagaagagtggccggaccgcgccatt
attttcgccaataccaaacatcgttgcgaagatatctggggccatctggcagcagatgga
catcgtgtaggcctgttgaccggcgacgtagcgcagaaaaaacgcctgcgtatcctggaa
gactttacccgtggcgacgtagacattctggtcgcgaccgatgttgccgcacgtggtctg
catattccggcagtgacgcacgtctttaactacgatctgcctgacgactgcgaagattac
gttcaccgtatcggtcgtaccggacgtgccggcgccagcggtcactctatcagcctcgcc
tgtgaagagtacgcgctgaacctgcctgccatcgaagagtatatcggtcacggcatcccg
gtgagtaaatataacagcgacgcgttgatgaccgatcttccgccgccgaaacgcctgacg
cgtaaccgtccgggtagcggtccgcgccgtgctgcgggcaacaaccgtcgcagcggtgca
ccgcgtaacaataaccgtaaacgttcaggttaa
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