Pantoea alhagi: B1H58_19810
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Entry
B1H58_19810 CDS
T05014
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
palh
Pantoea alhagi
Pathway
palh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1H58_19810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palh03019
]
B1H58_19810
03009 Ribosome biogenesis [BR:
palh03009
]
B1H58_19810
Enzymes [BR:
palh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B1H58_19810
Messenger RNA biogenesis [BR:
palh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1H58_19810
Ribosome biogenesis [BR:
palh03009
]
Prokaryotic type
rRNA processing factors
B1H58_19810
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ARJ44070
UniProt:
A0A1W6BAG6
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All DBs
Position
4143829..4147254
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AA seq
1141 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRDAVNAIEKRQGGVRAIIVPNDQMQ
TPHYSVLRVRSGEETQTLSYHLPKLHEAEMALPSENEQAERRRPEQPALAAFVMPDTPPA
PQETAVESSKPAQPAVPKQAAAEPAASTGIIGRLFGGLKKLFASEPAAPATAGQPQQDKA
AGDESEPTQQRERRQGNNRRNNNNNRRDRNRDRNGENAPQQARDNRETRDNRETREEPRR
NNKRQQANAEVREETQNTLTDEARAQREEQQQQRREQRAERQRRRQEERRQQQEAAKAAA
QQEQQPVASVVEESEENPAEERVQVMPRRKPRQLAQKVRVVSAETVAETQPAIDDVKAAP
EETPQFEAAAPEAQTQPEEQQEEQENRDNGNMPRRSRRSPRHLRVSGQRRRRYRDERYPT
QSPMPVSCAAASPEMASGKVWVRYPVAQASQETVQAADVQHETPDYSHVETAAAVALPVA
ASEAAVEASSAQPAEAEQQTAQDAVHEVAPQQFDAPVTPVDTHDTSAIEVPVNEEPSVIP
AAAEARAAQVAAQAQPADDAVNASAEAAEPEAAPVETAAAEAAQAASVPVETVQQNVEAT
PSVTDEQQAVAVASASDVSADTAAQVGQVLNAPAIEPEEVLPVREPHAPVPARDQAPAAS
QSLLAGKYHASAPMTKAPAPAWQPEAPRHSDWVRPPFQFEGKGAAGGHSATHQATAPATK
P
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaataaacgcaactcaacaggaggagttgcgtgtcgccttagtagat
ggacaacgtctgtacgacctggatattgaaagccccggacacgaacagaaaaaggcgaat
atctataaaggcaagatcacccgcattgagccaagtctggaagcagcatttgttgattac
ggcgctgaacgacacggtttccttccgcttaaagaaatttcccgcgaatatttccctgcc
agctacaacgctcatggccgccccaatatcaaagacgtattgcgcgaaggtcaggaagtc
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggctctgaccacctttatc
agcctggcaggcagctatctggtgctgatgccaaataacccacgcgcaggcggcatttca
cgccgtattgaaggcgatgaccgcaccgagctgaaagaagcgctctcgtcgcttgagctg
ccggacggcatgggcttaatcgtgcgtaccgcaggcgtgggcaaatcagccgaagcgctg
cagtgggatttaagcttccgtctgaagcactgggaagcgatcaaaaaagcggcggaaaat
cgtccggcgcccttcctgatccatcaggaaagcaatgtgattgttcgcgccttccgcgac
tatctgcgccctgacatcggcgaaatcctgattgataacccgaaagtcctcgatctggcg
cgtcagcatatcgccgcccttggtcgtcctgatttcagcagcaaaatcaaactgtacacc
ggtgaaattccgctgttcagccattaccagattgaatcccagatcgaatcggccttccag
cgtgaagtgcgtctgccttccggcggctcgattgtgatcgacagcactgaagcgctgacc
gcgatcgatatcaactcagcacgcgccacgcgcggcggcgatatcgaagagacagcgttt
aacaccaatcttgaagctgccgacgaaattgcgcgtcagctgcgcctgcgcgaccttggc
ggcctgatcgttatcgactttatcgatatgacgccggtacgccatcagcgtgcggtagaa
aaccgtctgcgcgaggccgttcgtcaggatcgcgcccgtatccagatcagtcatatctcc
cgcttcggcctgctggagatgtcgcgtcagcgtcttagcccatcgctgggtgaatcgagc
caccatgtttgcccgcgctgtagcggaaccggcaccgttcgtgataacgaatcgctgtcg
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagtgcac
gccattgtgccggtgccgatcgcctcgtatctgctgaacgaaaaacgcgacgccgttaat
gccattgaaaaacgtcagggcggcgtgcgtgcgattatcgttccgaacgatcagatgcag
acgccgcactactcagtactgcgcgtacgcagcggtgaagagacgcaaacgctcagctat
cacctgccgaaactgcatgaagctgagatggcgctgccgtctgaaaacgagcaggctgaa
cgtcgtcgccctgagcagcctgcactggccgcctttgtgatgcctgatacgccgcctgcc
ccgcaggaaaccgccgttgaaagcagtaaacctgctcagcccgccgtgccgaagcaggcc
gcagcggaacctgccgcatcgaccggtattatcggacgcctgtttggcggcctgaaaaag
ctgtttgcctctgagccggctgcgccagccacagccgggcagccgcagcaggataaagct
gctggcgatgagtctgaaccaacccagcagcgtgaacgccgacagggcaacaaccgccgc
aacaacaacaataaccgccgcgatcgtaaccgtgaccgcaacggggaaaacgccccacaa
caggcgcgcgataatcgtgaaacccgtgataatcgtgaaacccgtgaagagccgcgtcgt
aacaacaaacgccagcaggccaatgctgaagtgcgtgaagagacgcaaaacacgctgact
gacgaagcacgcgcgcagcgtgaagagcagcagcagcagcgtcgtgagcagcgtgccgaa
cgtcagcgtcgccgtcaggaagagcgtcgtcagcagcaggaagccgccaaagccgccgct
cagcaagagcagcagccggtagccagcgtcgttgaagagagcgaagagaacccggcggaa
gagcgcgttcaggtcatgccgcgtcgtaagccgcgtcagctggcgcagaaagtgcgcgtg
gtcagcgcggaaacagtggcggaaacgcagcctgctattgacgacgtgaaagcggctcca
gaagagacgccgcagttcgaagccgccgcgccagaagcgcagacgcagcctgaagagcag
caggaagagcaggagaaccgcgataacggcaatatgccgcgccgctcacgccgctctccg
cgtcatctgcgcgtcagcggtcagcgtcgtcgtcgttaccgcgatgagcgttatccgacg
cagtctccgatgcctgtctcctgtgctgcagcctcgccggaaatggcttcaggtaaagtc
tgggttcgctatccggtcgcgcaggccagccaggagaccgttcaggcagctgatgtgcag
catgaaacgccggactacagccacgttgaaaccgctgccgccgttgctttgccagttgcc
gccagcgaagccgccgttgaggcatcttccgctcagccggcggaagctgaacagcaaacg
gcgcaggatgcagtacatgaagttgcgccgcagcagtttgatgcgccggtaacgccggtt
gatacgcatgacacttcagctattgaagtgccggtaaatgaagagccttctgtgattccg
gccgctgctgaagcacgtgccgctcaggttgccgctcaggcgcaaccggcagacgacgcg
gttaacgcgtcagcagaagccgctgagccagaagctgcgccggtggaaaccgcagcagca
gaagccgctcaggcagcatcggttccggttgaaaccgtgcagcagaacgttgaagccacg
ccgtccgtaacggatgagcagcaggctgttgccgtggccagtgccagcgacgttagcgct
gatacggcggcccaggtcgggcaggtgctgaatgcgccagcaatcgagccagaagaggta
ttgccggttcgcgaaccgcatgcgccggttccggctcgtgatcaagcgcctgcagccagt
cagtccctgctggccggtaaataccatgccagcgcgccgatgacgaaagcaccggctccg
gcatggcagccagaagcgccgcgtcatagcgactgggtacgtccgcccttccagtttgaa
ggcaaaggcgcagccggtggccacagcgcgacacatcaggcaacggctccggccaccaaa
ccctga
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