Psychrobacter alimentarius: A3K91_2275
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Entry
A3K91_2275 CDS
T04320
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pali
Psychrobacter alimentarius
Brite
KEGG Orthology (KO) [BR:
pali00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pali03016
]
A3K91_2275
Enzymes [BR:
pali01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A3K91_2275
Transfer RNA biogenesis [BR:
pali03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A3K91_2275
Prokaryotic type
tRNA splicing ligases
A3K91_2275
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AMT97854
UniProt:
A0ABN4N4B8
LinkDB
All DBs
Position
complement(2770329..2771543)
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AA seq
404 aa
AA seq
DB search
MSIQLVLNKNSKHGVPVKIYTTDVEQGAMQQLRNLAQLEFVHSHIAVMPDVHVGKGATVG
SVIPTKSAIIPAAVGVDIGCGMNAVRLSLTASDLPDSLKLLRSIVEQQVPVGFNLHKQIQ
AKNSTLDPLGKRLKPITDKHPGLLKMLKGFERTWAKQLGTLGGGNHFIELCLDENNDVWV
MLHSGSRGIGNCIGRYFINLAKKERQSRFGHVPDRDLSYFAEGSDSFADYVEAVGWAQDY
ALENRREMMRLVIKALQSPQAGLPRFQLTKEAINCHHNYVNEEVHFGEQVYVTRKGAISA
YAGELGIIPGSMGAKSFIVRGLGAAESFCSCSHGAGRQMSRGKAVRAFTIDELKAQTAGV
ECRKDKGVIDEIPGAYKDIDEVMANQRDLVEVVHTLKQVMCIKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgagcattcaattagtattaaataaaaatagcaaacatggcgtccctgtcaaaatatac
accaccgatgttgaacaaggtgccatgcagcaactacgcaacttggcccagttagaattt
gtacattcgcacattgctgtcatgcctgatgtccatgttggcaaaggcgcgaccgtcggt
agcgtgattccgaccaaatctgccattatacctgcggcagtcggtgtagatattggctgt
ggtatgaatgcggtacgattgtcgctgacagcaagtgatttgccggatagtttgaagtta
ttacgttcgatagtagaacagcaggtgccggtagggtttaacttgcataaacaaatccaa
gccaaaaactcgacgcttgatccgcttggcaaacgactgaaacctattaccgataagcat
ccgggtttactcaaaatgctaaaaggctttgagcgtacgtgggccaagcagctcggcacg
cttggcggtggcaatcatttcattgagctgtgtttggatgaaaacaacgatgtttgggtc
atgctgcattctggtagtcgcggtattggcaactgtatcggccgctattttatcaatctg
gccaaaaaagagcgccaatcacgctttggtcatgtgcctgatcgtgatttgtcgtatttt
gctgagggctctgacagctttgctgattatgttgaggcggtcggctgggcgcaggattac
gcgctagagaaccgccgcgagatgatgcggttggtgattaaggcgttgcaatcgccgcaa
gcaggactgccacgatttcagctgaccaaagaagccatcaattgccatcacaactacgtc
aatgaagaggtgcattttggcgagcaggtttatgtgacccgtaaaggcgcgattagtgct
tacgcaggtgagcttggcatcatccctggctctatgggcgcaaaatcttttatcgtccgt
ggtcttggcgcggcagaatcgttttgctcatgttcacacggggcaggtcggcagatgagc
cgaggtaaagcggtgcgcgcgttcaccattgatgagctaaaagcgcagacagctggggtt
gaatgtcgcaaagacaaaggcgtcatcgatgagataccgggcgcgtacaaagacattgat
gaagtgatggccaaccaacgagacttggttgaagtggtgcatacgctcaagcaagtcatg
tgtattaaaggctaa
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