Pendulispora albinea: LZC94_24100
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Entry
LZC94_24100 CDS
T10974
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
palj Pendulispora albinea
Pathway
palj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZC94_24100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palj03019
]
LZC94_24100
03009 Ribosome biogenesis [BR:
palj03009
]
LZC94_24100
Enzymes [BR:
palj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LZC94_24100
Messenger RNA biogenesis [BR:
palj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZC94_24100
Ribosome biogenesis [BR:
palj03009
]
Prokaryotic type
rRNA helicases
LZC94_24100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
P-loop_SecA
YuA_Gp49
AAA_30
Cas3-like_C_2
AAA_19
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
WXB10956
LinkDB
All DBs
Position
6274347..6276356
Genome browser
AA seq
669 aa
AA seq
DB search
MSEEASPPSSSTPPTFDVIPLSADVRRAIDALGYVHPTPVQRAVFEPAVRGRSLVVQART
GTGKTAAFGLPIVDQLVRRGVNQVQALILTPTRELALQVARELTHLGQFRGTKVTAIYGG
APMGKQIDELASGAQVVAGTPGRVLDHLRRGTLDPSNIRIFVLDEADEMLSMGFAKELHA
IVDLLPRERQGLFFSATIPPDIERLAVNQLRDPEFVTLSSDQVGALEIHHFVYLVGQNDK
RKELIRILDVEDPESAIVFCNTRDETERVAEVLKNHGYDAEWLNGDLEQRERERIMQNTR
EGKLRFLVATDVAARGIDISHLTHVINADFPESAEQYVHRTGRTGRAGKTGTAISLVGPK
NIGALYILRLTYKIRPIEKQLPTAAELKTRTEHDLLTMFAEAFGKAHVQPDDLALARRLL
THIDVEPIVAGLLRGYLGAREEAGEDPKQEAAEARRAKNPPKLESEPAAPPAPVMARADG
RRGDREPPPPSVGPRRPSRSGGARAELRRHGTSPIARESGYREPRYQVHDAPVAPAPVDP
APPVATVTVPAPAPVPTPAPQAPQAPHVVAAAEGNASDASEAEAQNDERNFARIFVNVGR
RDGVGPLDFHRMLFEGAGLSQKDVGPIHVRDRISFVSVRREWLDKSVSALAGQIVGGRSI
VAEPARERA
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaagaagcgtctcccccctcctcctcgactcccccgacgttcgacgtcatcccc
ctgagcgccgacgtccggcgcgccatcgacgctctcggttacgtgcaccccaccccggtg
cagcgggccgtcttcgagccggccgtgcgagggcgcagcctggtggtgcaagcgcgcacg
ggaaccggaaaaacggcggccttcggcctgcccatcgtcgaccagctcgtgcgccgcggc
gtgaaccaggtgcaggcgctgatcttgacgcccacgcgcgagctggcgctgcaggtcgcg
cgtgagctcacccacctcggccagttccgagggaccaaggtcaccgccatctacggcggc
gcccccatgggcaagcagatcgacgagctggcctccggcgcgcaagtcgtggccggaacc
cccgggcgcgtgctcgaccacctgcgccgcggaacgctcgatccctcgaacatccgcatc
ttcgtgctcgacgaggccgacgagatgctctccatgggcttcgcgaaagagcttcacgcc
atcgtcgacctcttgccacgcgaacgacaagggctgttcttcagcgccaccatcccgccg
gacatcgagcggctcgccgtcaaccagctgcgcgatccggagttcgtcacgctctccagc
gatcaggtgggcgcgctggagatccaccacttcgtctacttggtgggacagaacgacaag
cgcaaggagctcattcgcatccttgacgtggaggatcccgagagcgccatcgtcttctgc
aacacacgcgacgagaccgagcgcgtggccgaggtgctgaagaaccacggctacgacgcc
gagtggctcaatggcgatctcgaacagcgcgagcgcgagcgcatcatgcagaacacgcgc
gagggcaagctgcgctttctggtggccaccgacgtggccgcgcgcggcatcgacatttcg
cacctcacgcacgtcatcaacgccgacttccccgagagcgccgagcagtacgtgcaccgc
accggccgcacggggcgcgccgggaagaccggcaccgccatctcgctggtggggcccaag
aatatcggtgcactctacatccttcgcctcacgtacaagatccggcccatcgagaagcag
ctgcccacggcggcggagctcaagacgcgcaccgagcacgatctgctcacgatgttcgcc
gaggcgttcggcaaggcccatgtgcagcccgacgatctcgcgctcgcgcgccggctgctc
acgcacatcgacgtggagcccatcgtcgccggtctcttgcgcggctacctcggcgcgcgc
gaagaggccggagaagatccgaagcaggaggccgcggaggcccggcgggcgaaaaatcct
ccgaagctcgaatcggagcccgccgcgccgcccgctcccgtgatggcccgcgccgacggg
cgaaggggcgaccgcgagccgccgcctccctcggtgggcccgcggcgcccgagccgatcg
gggggcgcgcgcgccgagttgcgacgtcacggcacatctccgatcgcgcgcgaatcgggg
taccgcgagcctcgctatcaagtgcacgatgcaccggtggcgccggcgcccgtcgacccc
gctccgccggtggccacggtgaccgtgcccgcaccggcgcccgtgcccacgcccgcgccg
caagcgccgcaagcgcctcacgtcgtggcggcggcagaaggaaacgcgagcgatgccagc
gaggccgaggcgcagaacgacgagcgcaactttgcgcgcatcttcgtgaacgtgggccgg
cgcgacggcgtggggccgctcgattttcatcgcatgctcttcgagggcgcgggcctctcg
cagaaggacgtggggccgatccacgtgcgcgatcgcattagtttcgtgagcgtgcggcgc
gagtggctcgacaagtcggtgtcggcgctcgcggggcagatcgtgggcggccggagcatc
gtggcagagcctgcgcgcgagcgcgcgtga
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