Pendulispora albinea: LZC94_39150
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Entry
LZC94_39150 CDS
T10974
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
palj Pendulispora albinea
Pathway
palj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZC94_39150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palj03019
]
LZC94_39150
03016 Transfer RNA biogenesis [BR:
palj03016
]
LZC94_39150
Enzymes [BR:
palj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LZC94_39150
Messenger RNA biogenesis [BR:
palj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LZC94_39150
Transfer RNA biogenesis [BR:
palj03016
]
Prokaryotic type
tRNA degradation factors
LZC94_39150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
Dimerisation
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WXB13840
UniProt:
A0ABZ2LU23
LinkDB
All DBs
Position
10030481..10033219
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AA seq
912 aa
AA seq
DB search
MQRNLPSRNQVLEALSNESGAVHAHELATRLGVEEPSYPGFLRFLDDLVFQGILTARDGH
KFRLSGKTGAGPNAGARTSTSTGTSQASRGEEREGIISIAPRGFGFVASIGAPGDDVFIP
PPGLAGAMHGDKVRIAIVSRTNKGKEGTVLQVLTRHVKRVAGTLRRRGRSAWLEPDDTRI
RGPIVLERDIDTVTGEGNSGKDGDAAVVSIARYPELPDENPVGKLEAILGTPGEIAVEVA
KVLVREQVEEVHSPEAFAEAEAYGVEVPAEMLEGREDLTHIPLPTIDPEDARDHDDAVWV
ERSPEGDGYVAWVAIADVSSYVRPGTRLDAEALARGCSIYLPDRAIPMLPRPLSSNLCSL
LPDVVRLCLCAQIELDGAGRVKRARLIRGFMKSQAKLTYGGVARALGLTDGPPRDPKADA
MVDGLRVAYELSRKLRGLRMKRGAIDFDLPEAKIVLGDEGEPLDVMRRAEDAGVKKAYQL
IEELMLLANEVVARWFVQRELPAIYRVHAPPDPEKLDRFARLCEQLGIEFEMEQAEDPKK
LSELVRSFSELEEASVLHMLLLRSMKQATYDVVNIGHFGLASKAYLHFTSPIRRYPDLVV
HRAVHAALLAGAGSREGAQTISEQELTEAALTSSAAERRVMDIEREVADLYRAVFMRDRV
GQQFEGSVTALVGSGAYVNLDEPFVDVLVRFEDLGAGPFELDDDGLRAISASGDAIQLGD
RITVEIIDVSIVRRAVYGRRLFGFRERDAGPKLPRKKSKQKTNGWASPEEPRTKGSRRRI
VRTDDQGRIEKGRVDRGRIDEGRKGKAGREDRVGREDRVGRDGGEEREGRSGRGKSLRGK
AVVTAKPSKPSKKKAKVGKTRKAAEGRETRETRKTVRAGKLRTKAAAPKTKKNEKRKNGK
PSKKVKKKKGRG
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaaatcttcccagccgtaatcaagtcctcgaagccctctcgaacgaatcaggt
gccgttcacgcacatgaactcgcgacgcgtttgggtgtcgaggagccgagctatcccggc
tttttgcgctttctcgatgacctcgtctttcaaggcatcctgaccgcgcgggatggccat
aaattccgactttccggcaagacgggcgcgggcccgaacgccggcgcccgcaccagcacc
agcaccggcaccagccaagcatcgcgcggcgaagagcgcgagggcatcatttcgatcgcg
ccccgcggcttcggcttcgtcgccagcatcggagcgcccggcgacgacgtgttcatcccg
cccccgggcctcgccggcgccatgcacggcgacaaggttcgcatcgccatcgtctcgcgc
accaacaaaggcaaggagggcacggtcctccaggtgctcacgcgccatgtcaaacgggtg
gcgggcacgttgcggcggcgcggccggagcgcttggctcgagcccgacgacacgcgcatc
cgcggccccatcgtgctcgagcgcgacatcgacaccgtgacgggcgaaggcaacagcggc
aaggacggcgacgccgccgtcgtgtccatcgcgcgctaccccgagctccccgacgagaac
ccggttggaaagctcgaggccatcctcggcaccccaggcgaaattgcggtcgaggtggcg
aaggtgctcgtgcgcgagcaggtcgaggaggtgcactcgcccgaggccttcgccgaggcc
gaagcctacggcgtcgaggtccccgccgagatgctcgaggggcgcgaggatctgacccac
atacctctacccaccatcgatccggaggacgcgcgcgatcacgacgatgccgtgtgggtc
gagcgcagccccgaaggtgacggctacgtcgcctgggtggccatcgccgatgtgagctcc
tacgtgcgccccggaacgcgtctcgacgcggaggcgctcgcgcgggggtgcagcatctac
ctcccggaccgcgcgatcccgatgctcccgcggccgctctcgtcgaacctgtgctccctc
ctccccgacgtggtgcgcctctgcctgtgcgcgcaaatcgagctggatggcgcgggccgc
gtgaagagggcgcggttgatccgcggcttcatgaagagccaggcgaagctgacctacggc
ggcgtggcgcgcgcgctgggcttgaccgatgggccgccgcgcgatcccaaggccgacgcc
atggtcgatgggctgcgcgtcgcctacgagctgtcgcgcaagctgcgcggcctgcgcatg
aagcgcggggccatcgacttcgatctgcccgaggcgaagatcgtcctgggcgacgagggc
gagccgctcgacgtcatgcggcgggcggaggacgcgggggtcaagaaggcgtatcagctg
atcgaggagctgatgctcctggcgaacgaggtggtggcgcgctggttcgtgcagagggag
ctgcccgcgatttaccgggtgcacgcgccgccggatccggagaagctcgatcgcttcgcg
cggctgtgcgagcagctcggcatcgagttcgagatggagcaagccgaggatcccaagaag
ctcagcgagctggttcgctcgttctccgagctggaggaggcgagcgtgctccacatgctg
ctcctccggtcgatgaagcaggcgacctacgacgtcgtcaacatcggccacttcgggctc
gcctcgaaggcttacttgcactttacatcgcccatccggcgctacccggacttggtggtg
catcgcgcggtgcacgcggcgctcctcgccggcgcgggctcgcgcgagggcgcgcagacc
atctccgagcaggagctgacggaggccgcgctcacgtcgtcggccgccgagcggcgcgtg
atggatatcgagcgcgaggtggccgatctctatcgcgcggtgttcatgcgcgatcgggtg
gggcagcagttcgaggggagcgtcacggcgctcgtcggatcgggcgcgtacgtcaacctg
gacgagccgttcgtcgacgtgctggtgcgcttcgaggatctgggcgcgggccccttcgag
ctcgacgacgatggtctgcgcgccatctccgcgtcgggcgacgccattcagctgggcgat
cggataacggtggagatcatcgacgtctccatcgtccgccgcgccgtctacggaaggcgc
ctcttcggcttccgcgagcgcgacgccgggcccaagctgcctcggaaaaagtcgaagcag
aagacgaacgggtgggcctcgccggaggagccccggaccaagggctcgcgccgcaggatc
gtccgcaccgacgaccaaggccgcatcgaaaaggggcgcgtcgacaggggccgcatcgac
gaggggcgcaagggcaaggccggccgcgaagaccgagtcggccgcgaagaccgagtcggc
cgcgatggcggcgaagagcgcgaaggccggagcggccgcggcaagagcctgcgcggcaag
gccgtcgtgaccgccaagccgtcgaagccgtccaagaagaaggcgaaggtcggaaagacg
cgaaaggcggcggagggccgggaaacgcgggagacccggaagacggtgcgcgcgggcaag
ctgcgaacgaaggcggcggcgccgaaaacgaagaaaaatgagaagaggaagaacggaaag
ccttcgaagaaggtgaagaagaagaaagggcggggctga
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