Pseudomonas alkylphenolica: PSAKL28_01060
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Entry
PSAKL28_01060 CDS
T03238
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03030
DNA replication
palk03410
Base excision repair
palk03420
Nucleotide excision repair
palk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSAKL28_01060
03410 Base excision repair
PSAKL28_01060
03420 Nucleotide excision repair
PSAKL28_01060
03440 Homologous recombination
PSAKL28_01060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palk03032
]
PSAKL28_01060
03400 DNA repair and recombination proteins [BR:
palk03400
]
PSAKL28_01060
Enzymes [BR:
palk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSAKL28_01060
DNA replication proteins [BR:
palk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSAKL28_01060
DNA repair and recombination proteins [BR:
palk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PSAKL28_01060
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSAKL28_01060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
Motif
Other DBs
NCBI-ProteinID:
AIL59344
UniProt:
A0A077F5U8
LinkDB
All DBs
Position
111815..114577
Genome browser
AA seq
920 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRRQYPDSLFAVVFD
AKGGTFRDEMFAEYKANRPSMPDDLRVQVEPLHASVRALGYPLLCVEGVEADDVIGTLAR
SSAAAGRPVIISTGDKDMAQLVDGHITLVNTMTGTVLDVPGVHEKFGVGPEHIIDFLALM
GDKVDNIPGVPGVGEKTAVGLLTGIGGGLRELYENLDKVPGLAIRGAKTLPAKLEEHRDA
AFLSYELATIKIDVPLEVEVDELVCGEPDRDALLELYTEMEFKSWIDEVQRDAKRAGQEI
VVETPEETVEAKYETILDQARFDVWLEKLRKAPLFAFDTETTGLDAQQAQLVGLSFAVQA
HEAAYVPLTHTYMGVPEQLDRDTVLLALKPLLEDPKKLKVGQNAKYDMNILANCAIGGDI
ANGILMQGVAYDTMLESYVLDSTATRHDMDSLALKYLNHTTIGFTDIAGKGAKQLTFDQI
SLEQAGPYAAEDADVTLRLHQALQQKLAKTPSVLPVLNDIEMPLVPVLAKIERQGALVDA
NLLGIQSVELGEKLVQLEREAFDIAGEEFNLGSPKQLGVILYEKLGMPVLNKTAKGQAST
AEAVLAELAEMDFPLPKVLMQYRSLSKLKSTYTDRLPEQINPRTGRIHTSYQQAVAATGR
LSSSDPNLQNIPIRTAEGRRIRQAFIAAPGYKLLAADYSQIELRIMAHLAKDEGLLHAFR
NDLDVHRATAAEVFGVDLAEVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYI
DRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEINAKNPALRKGAERTAINAPM
QGTAADIIKRAMVAVDNWLTDSGLDARVILQVHDELVLEVREDLVEQVREQIRPHMSNAA
ALDVPLLVEVGVGANWDEAH
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagctcccctcgtcctggtggacggttcctcatacctctaccgcgcctttcac
gcgctgccgccgctgaccacctccaagggcatgccgaccggtgcggtcaaaggcgtgctg
aacatgctcaagagcctgcgcaggcaatacccggacagtctgtttgcggtggtgttcgac
gccaagggcgggacctttcgcgacgaaatgttcgccgagtacaaggccaaccgcccaagc
atgccggacgatctgcgggtgcaggttgagccgttgcacgccagcgtccgcgccttgggt
tatccactgctgtgcgtcgaaggtgttgaagccgacgatgtgatcggcaccctggcccgc
agcagtgccgcagccggtcgtccggtgatcatctccactggcgacaaagacatggcgcag
ttggtcgatggccacattacgctggtcaacaccatgaccggtactgtcctcgatgtgcct
ggcgtgcacgagaaattcggcgtcggtcctgagcacatcatcgatttcctcgccctgatg
ggtgacaaggtcgacaacatcccgggtgtgcctggggtgggtgaaaaaaccgccgtcggc
ctgctcaccggtatcggcggcggcctgcgcgagctgtacgagaacctcgacaaggttccg
ggcctggccattcgcggcgccaagaccctgcctgccaagcttgaagagcaccgcgatgcg
gccttcctctcctatgaactggcgaccatcaagatcgatgtgccgctggaggttgaagtg
gatgagctggtctgcggcgaaccggaccgtgatgcgctgcttgagctgtatacagagatg
gagttcaagagctggatcgacgaagtgcagcgcgacgccaagcgcgccggtcaggaaatc
gttgtcgagacgcctgaggaaactgtcgaagcgaaatatgaaaccatcctcgatcaggcc
cgcttcgacgtctggctggaaaagctgcgtaaagcgccactgttcgccttcgataccgag
accactggcctggatgcgcaacaagcgcagctggttggcctgtcgttcgcagtgcaggcc
catgaggccgcttatgtgccgttgacccacacctacatgggcgtacctgagcaactggac
cgcgacacagtgctgctggcgctcaaaccgctgctcgaagacccgaaaaagctcaaggtc
gggcagaacgccaagtacgacatgaacatcctcgccaactgcgccatcggcggtgatatc
gccaacggcatcctgatgcagggcgtggcttacgacaccatgcttgagtcctatgtgctc
gactcgacggctacccgtcatgacatggacagcctggcgctcaagtacctgaaccacacc
accatcggtttcaccgacattgctggcaaaggcgccaaacagctgaccttcgaccagatc
agccttgaacaggccggcccctacgccgcggaagacgccgatgtgaccctgcgcctgcac
caggcgctgcaacagaagctggccaagaccccaagcgtgctgccagtgctgaacgatatc
gagatgccgctggtgccggttctggcgaagatcgagcgccagggtgcgctggtcgatgcc
aacctgctcggcatccagagtgtcgagctgggcgagaagctggtgcagctggagcgtgag
gccttcgacattgccggtgaggagttcaacctcggctcgcccaagcagctgggcgtgatc
ctctacgaaaagctgggcatgccggtactcaacaaaaccgccaaaggccaggcttcgacg
gccgaagcagtgctggcggagctggccgagatggacttcccgctgcccaaggtgctgatg
cagtaccgctccctgagcaagctcaaaagcacctacaccgaccgcttgccggagcagatc
aacccgcgcaccgggcgtatccacacttcctaccagcaagcggtggcagccactggccgt
ttgtcgtccagtgacccgaacctgcagaacatcccgatccgtaccgccgaaggccggcga
atccgtcaggccttcattgccgcgcccggctacaagctgttggcggccgactattcgcag
atcgaactgcggatcatggcgcacctggccaaagacgagggcttgctgcacgccttccgc
aacgacctggacgtacaccgggcaacggctgccgaggtgtttggcgtcgacctggccgaa
gtcaccaccgaccagcggcgcagtgccaaagcgatcaacttcggcctgatctacggcatg
agcgcctttggcctggccaagcagatcggtgtcgaccgcaagcagtcgcaggcctacatc
gatcgctatttcgcccgttaccccggtgtactggcgtacatggagcgcacccgggcacag
gccgctgagcaaggttttgtcgaaaccctgttcggtcgtcgcctgtacctgccggaaatc
aacgcgaagaacccggccttgcgcaaaggcgcggaacgcacagcgatcaacgcgccgatg
cagggtacggcggcagacatcatcaagcgcgccatggtggctgtggataactggctgacc
gactcggggctggacgcccgggtgatcctgcaggtgcacgacgaactggtgctggaggta
cgcgaggacctggttgagcaggtgcgtgaacaaattcgtccacacatgagcaatgccgca
gcactcgatgtaccgctgctggttgaggtcggtgtgggggcaaactgggacgaagcgcat
taa
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