Pseudomonas alkylphenolica: PSAKL28_04240
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Entry
PSAKL28_04240 CDS
T03238
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSAKL28_04240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palk03021
]
PSAKL28_04240
Transcription machinery [BR:
palk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSAKL28_04240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AIL59661
UniProt:
A0A077F8B8
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All DBs
Position
complement(480451..482301)
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVEYILSEYDRVTAEGGRLSDVLSGYIDPDDGIAPPAEV
PPPVDPKAPAKAEADDEEDEEKESSDDEEEAESGPDPVVAQQRFGAVQEQLNATLKVLKK
NGRQHKDSLKAMLELAELFMPIKLVPKQFEVLVERVRGALDRLRQQERAIMQLCVRDARM
PRADFLRLFPSNEVDQTWASDLSKRSTKWAAALGEKSDAIVACQQKLIDLQDETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgcatcaaagagttgatcacccgcggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgccagaggatatttcagatccg
gagcaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgcccttttgttggccgaagccgataccgacgaagccgcagctgaa
gaagccgccgcagcgttggcggctgtggaaaccgatatcggtcgcacgactgacccagtg
cgcatgtacatgcgtgaaatgggtaccgtcgagctgctgacccgcgaaggcgagatcgaa
atcgccaagcgtatcgaagaaggtattcgcgaagtcatgggcgctatcgctcacttcccg
ggtactgtcgaatacattctcagcgaatacgaccgggtaaccgccgaaggcggccgcctg
tcggatgttctcagtggctacatcgacccggacgacggcatcgccccgccggccgaagta
ccgccgcctgtcgatccgaaagcaccggccaaggccgaggctgacgacgaagaagacgaa
gagaaagaaagcagtgacgatgaggaagaggccgaaagcggtcccgatccagtcgttgcc
caacagcgctttggtgccgtccaggaacaactgaacgccaccctcaaagtgctgaaaaag
aacggccgccagcacaaggacagcctcaaggcgatgcttgaactggcagaactgttcatg
ccgatcaagctggtgccaaagcagttcgaagtactggtcgaacgcgttcgtggggccctg
gatcgtctgcgtcagcaagaacgcgccatcatgcaactgtgtgtccgtgacgcacgcatg
ccacgcgccgacttcctgcgcctgttcccgagcaacgaagtcgaccagacctgggccagc
gatctttccaagcgcagcaccaagtgggctgctgcactgggcgagaaaagcgacgccatc
gtcgcttgccagcaaaagctgatcgacctgcaggacgaaaccggcctgaccatcgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaagccaaggctcgccgggcgaagaaa
gagatggttgaggccaacctgcgtctggttatctcgatcgccaagaagtacaccaaccgc
ggcctgcagttcctcgacctgattcaggaaggcaacatcggcctgatgaaggcggtggac
aagttcgaataccgtcgtggttacaagttctcgacctatgccacctggtggattcgccag
gcgatcacccgttcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccggcagatgctgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggtgagcgcatggaaatgcctgaggacaaaatccgcaaggta
ttgaagatcgccaaagagccgatctccatggaaaccccgatcggcgatgacgaagattcg
cacctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccacggtc
gaaagcctcaaggaagcgacccgtgatgtgctctccggtctgaccgcacgcgaggccaaa
gtgctgcgcatgcgtttcggtatcgacatgaacaccgatcacaccctcgaagaggtcggc
aaacagttcgacgtgacccgtgaacggatccgtcagattgaagccaaggcgctgcgcaag
ctgcgccacccgacgcgaagcgagcatttgcgctccttcctcgacgagtga
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