Pseudomonas alkylphenolica: PSAKL28_04870
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Entry
PSAKL28_04870 CDS
T03238
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSAKL28_04870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palk03021
]
PSAKL28_04870
03400 DNA repair and recombination proteins [BR:
palk03400
]
PSAKL28_04870
Enzymes [BR:
palk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSAKL28_04870
Transcription machinery [BR:
palk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSAKL28_04870
DNA repair and recombination proteins [BR:
palk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSAKL28_04870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AIL59723
UniProt:
A0A077F2S9
LinkDB
All DBs
Position
549998..554071
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNAFYTTNVFHVSGES
LSLELVPQRLRGEIAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR
TTAKAIVHPATGEILAECNTELNTELLIKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDDIVFLSAIEEADHVIAQASAAMNEKKQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
VVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITNEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVIELRKFLTEIYNEIGGRQESLEDFSDQEILDLAKNLKGGVPMATP
VFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatcggtt
ttcccgatcatcagctactccggcaatgctgccctggagtacgttggctatcgtctgggc
gaaccggcttttgatgtcaaagaatgcgtactgcgcggcgtgacctacgcggtaccgctg
cgggtaaaagtccgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgaaaacggtaccttc
gtaatcaacggtaccgagcgtgttatcgtttcccagctgcaccgttcgccgggcgtgttc
ttcgatcacgaccgcggcaaaacgcacagctctggcaaactgctgtactcggcgcggatc
attccttaccgcggttcgtggctggacttcgaattcgatccgaaagactgtgtattcgtc
cgtatcgaccgtcgtcgcaagctgcctgcctcggtactgctgcgcgcgctgggctacagc
actgaagaagtgctcaacgctttctacaccaccaacgttttccacgtgtcgggcgagagc
ctgagcctggagctggtgcctcagcgcctgcgcggtgagattgcggtcatggatatccat
gacgaaaccggcaaggtgattgtcgagcaaggtcgtcgtattaccgctcgtcacatcaac
cagctggaaaaagccggcgtcaaacagctcgacgttcctatggaatacgtcctgggccgc
accaccgccaaggccatcgtgcacccggctaccggcgaaatcctggccgagtgcaacacc
gagctgaacaccgagctgctgatcaagatcgccaaggctcaggttgtccgcatcgagacc
ctgtacaccaacgacatcgattgcggtccgttcatctccgataccctgaagatcgactcc
accagcaatcagctggaagcgctggtcgaaatctaccggatgatgcgtcctggcgagccg
ccaaccaaggatgctgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtcggccgttggtcgcatgaagttcaaccgtcgtatcggtcgcaccgaaatcgaa
ggttcgggcgtgctgagcaaggaagacatcgtcgaggtcctcaagaccctggtcgatatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacctcggtaaccgtcgcgttcgttgc
gtcggcgagatggccgagaaccagttccgcgttggcctggtgcgtgttgagcgtgcggtc
aaagagcgtctgtcgatggcagaaagcgaaggcctgatgcctcaggacctgatcaacgcc
aagccggttgcggcggcggtgaaagagttcttcggctccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgtcgtgtctccgcactcggccct
ggtggtctgacccgtgagcgtgcaggcttcgaagtccgtgacgtacacccgacccactac
ggccgtgtgtgcccgatcgagacccctgaaggtccgaacatcggtctgatcaactccctg
gcggcctatgcccgcaccaaccagtacggtttcctggaaagcccgtaccgtgtggttaaa
gagggtgttgtcaccgacgacatcgtgttcctgtcggcgatcgaagaagctgatcatgtc
atcgctcaggcttcggccgcgatgaacgagaagaagcaactgatcgacgagttggtagcc
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaaacaggtagtttcggttgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccaaccctgcgtgct
gacaagccgctggtcggtaccggcatggagcgtaacgttgcccgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgattccgtcgatgccagccgtatcgtggttcgc
gttgccgatgacgaagttgaaaccggtgaagccggtgtcgacatctacaacctgaccaag
tacacccgttcgaaccagaacacctgcattaaccagcgtccgctggtgagcaaaggtgat
gtggttcagcgtagcgacatcatggccgacggcccgtccaccgatatgggtgaactggca
ctgggtcagaacatgcgtatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaagagatcaccgcggacattccg
aacgtcggtgaagctgcgctgaacaagctggacgaagccggtatcgtttacgtgggtgct
gaagtaggcgctggcgacattctggtcggcaaggtcacgccaaaaggcgaaacccagctg
acgccagaagagaagctgctgcgcgcgatcttcggtgagaaggccagcgacgttaaagac
acttccctgcgcgtgcctaccggcaccaaaggtactgtcatcgacgtacaggtcttcacc
cgtgacggcgttgagcgtgacagccgtgcgctgtccatcgagaagatgcagctcgacgag
atccgcaaggacctgaacgaagagttccgtatcgttgaaggcgcaaccttcgagcgtctg
cgttctgccctgaacggccaggtcgtcgatggtggtgcaggcctgaagaaaggcactgtg
atcaccaacgaagtgctggacggtctggagcacggccagtggttcaagctgcgcatggcc
gaagacgcgctgaacgaacaactcgagaaggcccaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggca
ccgggcgtactgaagatcgtcaaggtctacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctcggtgatcatgccggtcgaa
gacatgccgcacgacgccaacggtacgccagttgacgtggtactcaacccattgggtgta
ccatcgcgtatgaacgttggtcagatcctcgaaacccacctgggcctggcggccaaaggt
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaaggtcattgaactgcgcaag
ttcctcaccgagatctacaacgagatcggtggtcgtcaggaaagcctggaagacttctcc
gaccaggaaatcctggatctggcgaagaacctcaaaggcggtgtgccaatggccactcca
gtcttcgacggcgccaaggaaagcgaaatcaaggccatgctgaaactggcagacatgcca
gaaagcggtcagatgcagctgttcgacggccgtaccggtaacaagttcgagcgtccagtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcttacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcatac
accctgcaagaaatgctcacagtgaagtcggacgacgtgaacggtcggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
