Pseudomonas alkylphenolica: PSAKL28_04880
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Entry
PSAKL28_04880 CDS
T03238
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSAKL28_04880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palk03021
]
PSAKL28_04880
03400 DNA repair and recombination proteins [BR:
palk03400
]
PSAKL28_04880
Enzymes [BR:
palk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSAKL28_04880
Transcription machinery [BR:
palk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSAKL28_04880
DNA repair and recombination proteins [BR:
palk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSAKL28_04880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AIL59724
UniProt:
A0A077F6Z7
LinkDB
All DBs
Position
554136..558335
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGGSVKNTRIVDTTVGRALLFQVVPPGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRNGDEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLLLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTQVLVENERLSAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgtggcgttatctgtgagaagtgcggcgttgaagtcgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgagctggcctctccagttgcccacatctggttcctgaaatcgctg
ccgtcgcgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgttctctac
ttcgagagctatgtcgttatcgatccgggcatgaccactctggaaaaaggtcagctgctc
aacgatgagcagtatttcgaagcgctggaagagttcggcgatgacttcgacgcccgtatg
ggtgccgaagctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggtcgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgt
ctgaaactgatggaagccttccagggctcgggcaacctgcctgagtggatggtcctgacc
gttctgccggttctgccgccagatctgcgtccattggttccgctggatggcggtcgcttc
gcgacttccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgacctgtccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgatgccttgctggataacggccgtcgtggtcgtgccatcaccggctcgaac
aaacgtcctctgaaatccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactctggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggcgctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccagaggtttgggacgttctcgccgaagtgattcgcgaacacccg
gtgctgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcctttgaaccagta
ctgatcgaaggtaaggctatccagctgcacccgttggtctgtgccgcgtacaacgccgac
ttcgacggtgaccaaatggccgttcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggtgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagctgccctgcacgccaagatcaaggttcgtatcaacgaaaccgtcaacgatcgtgat
ggcggcagcgtcaagaacacccgtattgtcgacaccactgtcggccgtgctctgctgttc
caggttgtaccaccaggtctgtcgtacgacgtggtcaaccagccaatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagctgatgtacaccggttttgcctactcgaccatctccggcgtttccatcggt
gttaacgacttcgttatcccggatgagaaagcccgcatcatcggtactgctaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaactcagggcgagaagtacaac
aaagtcatcgacttgtggtccaaggcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcaatggcgacgaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactccggtgcccggggttcggcagctcagattcgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctcgatcatcgagacgccaattact
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaaccgcgaactccggttacctgacccgtcgtctg
gtagacgttgcccaggatctggttgttaccgagatcgactgcggtaccgagcagggcctg
ctgatgacgccgcacattgaaggcggcgacgttgtagagccgctgggtgagcgtgtactg
ggtcgtgttatcgcccgtgacgtgttcaagccaggcaccgacgacgttatcgttccggcc
ggtaccctggtcgacgagaagtgggttgaattcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctacggtatctgcgccaagtgctacggt
cgtgacctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgct
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccggacctcggctgccgacagcgtccaggtgaagaacggcggtatggtgcgtctg
cacaacctgaaacaggttgagcgtgccgacggtaacctggttgccgtatcgcgttccggt
gagttggcgattgccgacgagttcggtcgtgagcgtgagcgttacaagctgccttacggc
gccgtgatttcggtgaaggaaggcgacaaggtcgacgctggcgcaatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgaaatgaaaggtaccgtgaccttcgtgggcatg
gaagaaggcatcaccatcaagcgtcagactgacgaattgactggtttgaccaacattgaa
gttctggacgtcaaagatcgtccggctgcaggtaaggaaatccgtcctgcaatcaagatg
gtcgacgccaatggcaaggatctgctgctgccaggtaccgacgtaccggctcagtacttc
ctgccggcgaacgccctggttggtgtggctgacggtgcccagatcggtgtcggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccacgg
gttgccgacctgttcgaagcccgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgccttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccaagcgatccgcacgatatc
ctgcgtctgctgggtgtcagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgagatcgctgaatcgggtgactccagcttcatcaagggcgaccagatg
gaactgacccaggtactggtagagaacgagcgtctcagcgctgaagacaagtttgtctcc
aagttcactcgtgtactgctgggtatcaccaaggcctcgctgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccactcgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcataccacagcgagcgcaagcgtcgccgtgatgctgacaagccgctgcgc
gtaagtgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactga
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integrated database retrieval system
