Pseudomonas alkylphenolica: PSAKL28_05660
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Entry
PSAKL28_05660 CDS
T03238
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
palk
Pseudomonas alkylphenolica
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
palk03016
]
PSAKL28_05660
Enzymes [BR:
palk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PSAKL28_05660
Transfer RNA biogenesis [BR:
palk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PSAKL28_05660
Prokaryotic type
tRNA splicing ligases
PSAKL28_05660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AIL59802
UniProt:
A0A077F2U8
LinkDB
All DBs
Position
624344..625549
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AA seq
401 aa
AA seq
DB search
MNLLEVAGGKPIKLWTQGVPVEDEARQQLINTAKMPFIFKHLAVMPDVHLGKGSTIGSVI
PTLGAIIPAAVGVDIGCGMIAACTSLVAADLPDNLHRLRSAIEQAVPHGKTFGRHDQGAW
DKVPAQADHAWKDLAGRFKAITGKYPQLEKTNNRQHLGTLGGGNHFIEVCLDESDRVWFM
LHSGSRGVGNAIGNLFIELAQADMRQHIANLPDKDLAYFKEGSRHFNDYVEAVEWAQDFA
RQNRALMMHAVIAAARQVLGKPFEANLEAVNCHHNYVQREHHFGQDILVTRKGAVSAQKG
QLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTRAKKQFTLEDQVRATAHVECR
KDKDVIDEIPMAYKDIDAVMQAQRELVEVVHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgcttgaagtggccggcggcaaaccgatcaaactctggacccagggcgtgccg
gtggaagacgaagcccgtcagcagttgatcaacacggcgaagatgccgttcatcttcaaa
cacctggcagtcatgccggatgtgcacctgggcaaaggctcgaccatcggcagtgtgatc
ccgaccttgggcgcgattatcccggcggcggtcggcgtggatatcggctgcggcatgatc
gctgcgtgcacctcgctggttgccgcggacctgcccgacaacttgcaccggctgcgcagc
gctatcgaacaggcggtgccccatggcaagactttcggtcgtcacgaccagggtgcctgg
gacaaggttccggcccaggccgatcatgcctggaaggacctggccggtcggttcaaggcc
atcaccggcaagtacccgcaactggaaaagaccaataaccgccagcacctgggcaccctc
ggtgggggcaaccatttcatcgaagtctgcctggatgaaagcgaccgcgtctggttcatg
ctgcacagtggttcgcgtggcgtcggcaacgccattggcaacctgttcatcgaactggcc
caggccgacatgcgtcagcacatcgccaacctgccggacaaggatctggcctatttcaaa
gaaggcagccgccacttcaacgactacgtcgaagcggtcgaatgggcccaggattttgcc
cggcagaaccgtgccttgatgatgcacgcggtgatcgctgcggcccgccaggtacttggc
aaacccttcgaagccaacctggaggcggtcaactgccaccacaattatgtacagcgcgaa
caccacttcggccaggacatcctggtaacccgcaagggcgcggtatcggcgcagaaaggc
cagctgggcatcatccccggttccatgggcgcgaagagtttcatcgtccgtggcctgggc
aatgaagagtcgttctgctcctgcagccacggcgccgggcggaccatgagccgcacccgg
gcgaaaaagcagttcaccctggaagatcaggtgcgcgccaccgcgcatgtcgaatgccgc
aaagacaaagacgtgatcgatgagattcccatggcctacaaagacatcgatgcagtgatg
caggcgcagcgggagctggtggaggtggtgcataccttgcggcaggtggtgtgcgtcaaa
ggctga
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