Pseudomonas alkylphenolica: PSAKL28_06780
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Entry
PSAKL28_06780 CDS
T03238
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
palk
Pseudomonas alkylphenolica
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palk03019
]
PSAKL28_06780
Enzymes [BR:
palk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PSAKL28_06780
Messenger RNA biogenesis [BR:
palk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PSAKL28_06780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
Cas3-like_C_2
Flavi_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIL59912
UniProt:
A0A077F355
LinkDB
All DBs
Position
734321..736846
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AA seq
841 aa
AA seq
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MISLPIDAVLPALREGLSLRHEAVLEAPPGAGKTTRVPLALLNEPWLAGQSILMLEPRRL
AARAAAERLASELGEQVGQTVGYRIRLDSKVGPETRIEVVTEGILTRRLQADPALEGVGL
LIFDEFHERSLDADLALALSLNGRELLRDKPPLKILLMSATLEGERLSSLLDEAPVVSSE
GRMYPVDIRWGRPFQPGEYIEPRVVDCVLQAIADESGSLLVFLPGQAEIRRVHQSLQEAL
GERQDILLCPLHGELELNAQRAAIDAAPPGKRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHEQLAAYGSAEILQ
ADLAGLALQLARWGVTPDQLRWLDQPPAAAYAQALDLLQRLGAFKADSRDSLNEHGQAMA
ELPAHPRIAHLLLRGQDLGLAAMACDVAALLGERDILRGAGADLHSRLALLSGEARANKG
GQGGVQRARQLARQYRGYLRGKARSAVADPEHSRWLGALLALAYPDRVAQQRRAGGAEYR
LANGRAALFGEPDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALFDGVLVEQVRSVD
ILDWDERENVLRAERQRKVGELVLSREPLTGLDADARARALLELVRRKGLEMLSWTPELR
QWQARVALLRQLDLAANGASEWPDLSDEALLASLPEWLQPYLGKVTRLSHFAQLDLSSML
RNLLPWPLPQRLDEWAPMHLSVPSGSNIRLDYSETPPILAVRLQELFGLAETPRIAQGRQ
QVLLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLIAEATARAKPR
K
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgttaccgatcgatgccgtactgccagccttgcgtgaaggcttgagcctgcgc
catgaagcggtactggaagcgccacccggcgcgggcaagaccacccgtgtgccattggcg
ctactcaacgagccgtggctggcagggcagagcattctcatgcttgagccgcgccggctt
gccgcccgcgcggcggccgagcgactggccagcgagttgggcgagcaggtcgggcaaacg
gtcggctaccggattcggctggacagcaaagtcggtcccgaaacccggattgaagtggtc
accgaaggcatcctcacccgccgtctgcaggccgatccggcgctggaaggcgtcgggttg
ctgattttcgacgaattccacgaacgtagcctcgacgctgacctggccctggccctgagc
ctcaatggccgtgagctactgcgtgataagccgccgttgaagattctgctgatgtcggca
acccttgaaggcgagcgcctgtcgagcttgctcgatgaggcaccggtggtcagcagtgaa
gggcgtatgtacccggtcgatatacgctggggcaggccgttccagccgggcgagtacatc
gagccacgggtggtcgattgcgtattgcaggctattgccgacgagtcaggcagcctgctg
gtgtttctgcccggtcaggccgaaatccgccgggtgcaccagtcgttgcaggaggcgctg
ggtgagcgtcaggacattctcttgtgcccattgcacggcgaactggagctcaatgctcag
cgcgcggccattgatgctgcgccgcccggtaaacgcaaggtggtgctggcgaccaacatt
gccgagaccagcctgaccattgatggtgtgcgcgtggtgatcgatgccggcctggcgcgt
gtgccgcgcttcgacccgggcagcggcatgacccgcctcgacacccagcgtatctcgcgg
gccagtgccacccagcgtgccggtcgtgccggtcgccttgagccgggggtgtgttatcga
ctgtggtccgaggcccagcatgagcagctggccgcttacggcagcgccgaaattcttcag
gccgacctcgccgggctggccttgcagctggcgcgctggggtgtcaccccggatcaattg
cgctggcttgatcaacctcctgcagctgcttatgcacaggccctggatctgttgcagcgc
ctgggggcattcaaggctgacagtcgggacagcctgaatgagcacggccaggccatggcc
gagttacccgcacacccgcgcatcgcccatctgttgttgcgtggtcaggacctggggctg
gcggccatggcctgtgacgtcgctgcgctgctgggcgagcgcgatattctgcgcggcgct
ggcgccgatctgcacagccgcctggccttgctcagcggtgaagcccgcgcgaacaaaggc
gggcagggtggagtgcaacgtgcccggcaactggcccggcagtatcgtggctatctgcgt
ggcaaagcgcgctctgcggttgccgaccccgagcactcccgctggctgggtgcattgttg
gcgctggcttatccggaccgagttgctcagcagcgccgcgccggtggcgccgagtaccgt
ctggccaatggtcgcgcggcgctgtttggcgagcccgatgcgctgatgaagtgtccgtgg
ctggtgatcgccgaccttggcagtcgccagggtcagcgcgaagagcgcatctatctggct
gctgagttcgatcctgccttgtttgacggggtactggtcgagcaggtgcgcagtgtcgac
atcctcgactgggacgagcgtgaaaacgtattgcgcgccgagcgccagcgcaaggtcggc
gagctggtgctcagccgcgagccgttgaccggtctggatgcagatgcccgtgcgcgggcg
ctgcttgagttggtacgacgcaagggcctggaaatgctgtcatggacgcccgagctgcgt
cagtggcaagcgcgggttgccctgttgcgccagcttgatctggcagccaacggtgcaagc
gaatggcctgatctaagcgacgaggccctgctggcaagtctgccggagtggctgcaaccc
tacttgggtaaggttacccgcctgagccattttgcccagctcgacctgtcgtcgatgctg
cgcaatctgctgccctggccgctgccgcagcgtctggatgaatgggcgccgatgcacctg
agcgtgccttcggggtcgaatatccgcctggattacagcgaaacgccgccgatcctcgct
gtgcgcctgcaggagctgttcgggctggccgaaaccccgcgtatcgcccaggggcgtcag
caagtcctgctgcacctgctgtcgcctgcgcgacgcccagtgcaggtcacccaggatctg
gccaacttctggcgcagtacctatgccgaggtgaagaaggacctcaagggccgctacccg
aaacactactggccggacgacccgttgatcgccgaggctacggcgcgggccaagccgcgc
aagtag
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