Pseudomonas alkylphenolica: PSAKL28_06850
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Entry
PSAKL28_06850 CDS
T03238
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSAKL28_06850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palk03019
]
PSAKL28_06850
Enzymes [BR:
palk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSAKL28_06850
Messenger RNA biogenesis [BR:
palk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSAKL28_06850
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AIL59919
UniProt:
A0A077F7G4
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All DBs
Position
741244..742575
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AA seq
443 aa
AA seq
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MTFAKLGLIEPLLRALERLDYNTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QRLTLEGAKVASNSVRALVLVPTRELAEQVHSNIREYAEHLPLSTYAVYGGVSINPQMMK
LRKGIDLLVATPGRLLDLFRQNAVKFNQLQALVLDEADRMLDLGFAEELRAVYAALPARR
QTLLFSATFSDEIRQLAAQTLNDPLSIEVSPRNVTASTVKQWIVPVDKKRKPELFSHLMR
KQRWKQVLVFAKTRNGVDQLVERLRGQGVNADGIHGDKPQATRQRALDSFKAREIQILVA
TDVAARGLDIDDLPLVVNFDLPIVAEDYIHRIGRTGRKGNSGEAISLVCADEVQLLSAIE
TLTRKTLPRHEEPDFIPDHKVPMTDASGQVLKKPKKPKKPKESSGKRTLGRWMDSGDTPA
AAPAAKPVRKVPTFNTGPRKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgccaaactcggcctgattgaacccttgctgcgcgcgcttgagcgcctggac
tacaacaccccgacgccagtccaggcccaggccatccctgccgtgctggccgggcgcgac
ctgatggccgcagcccagaccggtaccggcaagaccgcaggcttcgccctgccgctgttg
cagcgcctgaccctggaaggcgccaaggttgccagcaactcggtgcgcgcgctggtgctg
gttccgacccgcgagctggccgaacaggtgcacagcaacatccgtgaatacgccgaacac
ctgccgctgagcacctatgcggtctacggtggcgtcagcatcaacccgcagatgatgaaa
ctgcgcaagggcatcgacctgctggtggcaacacctgggcgcctgctcgatctgttccgt
cagaacgcggtgaaattcaatcagcttcaggcgttggtactcgacgaagctgaccgcatg
ctcgacctgggctttgccgaagagctgcgtgcggtgtatgccgccttgccggcacggcgg
cagaccttgctgttctcggcgaccttttccgacgaaatccgccaactggccgcgcagacc
ctgaatgatccgttgagcatcgaagtcagcccgcgcaacgtcactgccagcacggtcaag
cagtggatcgtcccggtggacaagaagcgcaagccagagctattcagccacctgatgcgc
aagcagcgctggaagcaggtgctggtgttcgccaagacgcgcaacggtgtcgatcaactg
gtcgagcgtctgcgcggtcagggcgtgaacgccgatggcatccatggcgacaaaccccag
gcgacccgccagcgtgccctggacagtttcaaggcgcgagagatccagatcctcgtagcc
accgatgtggcggcacgcggcctggacattgacgacctgccgctggtggtcaacttcgac
ctgccgatcgtggctgaagactatatccaccgtattggccgcaccggtcgtaaaggcaac
agcggcgaggcgatctcgctggtgtgcgccgatgaagtgcagctgctatcggctattgaa
accctgacccgcaagaccttgccgcgccatgaagaaccggatttcattcctgatcacaag
gtgccgatgaccgatgccagcgggcaggtgctgaagaagccgaagaaaccgaagaagccc
aaggaaagtagcggcaagcgtacattgggtcgctggatggacagtggcgatacgccggca
gcagcgcctgcggccaaaccggtgcgcaaggtgccaaccttcaataccgggccgcgcaag
cgtaagccttga
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