Pseudomonas alkylphenolica: PSAKL28_07370
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Entry
PSAKL28_07370 CDS
T03238
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSAKL28_07370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palk03019
]
PSAKL28_07370
03016 Transfer RNA biogenesis [BR:
palk03016
]
PSAKL28_07370
Enzymes [BR:
palk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PSAKL28_07370
Messenger RNA biogenesis [BR:
palk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSAKL28_07370
Transfer RNA biogenesis [BR:
palk03016
]
Prokaryotic type
tRNA degradation factors
PSAKL28_07370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
TraK_C
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AIL59971
UniProt:
A0A077F9B6
LinkDB
All DBs
Position
800866..802971
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWTAKAEN
TSLLSAIRAELGEAVSQAYTITVKADRYARLGELRDQAIAKFSGEEGQPSAGEVKEIFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRSELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKDAAEAARQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagaaattccagttcggtcaatcgaccgttaccctcgagacgggc
cgtattgctcgtcaagcgtccggcgccgtattggtcaccgtcgacaacgatgtcaccgta
ctggtgaccgtggtcggtgccaaacaggccgatccaggcaaaggcttcttccccctgtcc
gttcactatcaggaaaagacctacgccgccggcaagatccctggtggtttcttcaagcgt
gaaggtcgtccttccgagaaagaaaccctgacctcgcgtctgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgccctggcaatc
tccggcattccattcgaaggcccgatcggtgccgcgcgcgttgctttccacgaaagcacc
ggctacctgctgaacccgacttacgagcaactggctgcctcgagcctggacatggtcgtt
gctggtacttccgacgccgttctgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgcggtactgttcgcccacgacgaattccaggctgttatccaggctgtc
aaagagctggctgccgaagctgccaagccgacctgggactggactgccaaggctgagaac
acttccctgttgagcgccattcgcgctgaactgggcgaagcggtttcccaggcttacacc
atcaccgttaaggccgaccgttacgctcgcctgggcgaactgcgcgatcaggcgattgcc
aagttctccggtgaagaaggtcagccatcggccggcgaagtcaaagaaatcttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccacgtatcgacggccgc
gacaccaagactgttcgtccgctgaacatcgaagtcggcgttctgccgaagactcacggt
tcggcgctgttcacccgtggcgaaacccaggccctggtcgttgcgaccctgggtactgcg
cgtgacgcccagctgctggacaccctcgaaggcgagaagaaagaccccttcatgctgcac
tacaacttcccgccgttctcggtaggcgagtgtggtcgcatgggcggtgctgggcgtcgt
gaaatcggtcacggccgtctggcccgtcgttcggtccaggccatgctgcctgccgctgac
gtgttcccgtacaccatccgcgtggtatcggaaatcaccgaatcgaacggctccagctcc
atggcttcggtctgcggtgcttccctggccctgatggacgccggtgtgccgatgaaggct
ccggttgccggtatcgccatgggtctggttaaagaaggcgagaagttcgctgtcctgacc
gacatcctcggtgacgaagaccacctgggcgacatggacttcaaagtagccggtaccgcc
aaaggtgttaccgcgctgcagatggacatcaagatcaacggcatcaccgaagagatcatg
gaaatcgccctgggccaggccctggaagcgcgcctgaacatcctcggtcagatgaaccag
atcatcggtcagtcgcgtagcgagttgtcggaaaatgctccgaccatgatcgccatgaag
atcgacaccgacaagatccgtgacgtcatcggtaaaggtggcgcgaccattcgtgccatc
tgcgaagaaaccaaggcttcgatcgatatcgaagacgacggctcgatcaagatcttcggt
gaaaccaaagacgccgctgaagctgctcgtcagcgcgttctgagcatcactgcagaagct
gaaatcggcaagatctacgttggtaaggtcgagcgcatcgttgacttcggtgccttcgtc
aacatcctgccaggcaaggacggtctggttcacatctccatgctgagcgatgctcgcgtt
gagaaagtgaccgacatcctgaaagaaggtcaggaagttgaagtactggtactggacgtg
gacaaccgcggtcgtatcaagctgtcgatcaaggacgttgccgctgccaaggcatccggc
gtctaa
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