Pseudomonas alkylphenolica: PSAKL28_14560
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Entry
PSAKL28_14560 CDS
T03238
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSAKL28_14560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palk03019
]
PSAKL28_14560
03009 Ribosome biogenesis [BR:
palk03009
]
PSAKL28_14560
Enzymes [BR:
palk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSAKL28_14560
Messenger RNA biogenesis [BR:
palk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSAKL28_14560
Ribosome biogenesis [BR:
palk03009
]
Prokaryotic type
rRNA helicases
PSAKL28_14560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AIL60682
UniProt:
A0A077F5C5
LinkDB
All DBs
Position
1592846..1594507
Genome browser
AA seq
553 aa
AA seq
DB search
MTQETGGFAALDLHPSIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPES
RQTVLFSATLPASIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLMVHADQKVSAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPNAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNAQALTLEAVEKEQPLVPTYTPRERTGERPERGERERRAPMPLGEGRARCR
TALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLERLLAKLKDTRV
AGKQLKLRRYRED
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcgatcttcatccgagcattgttgctgca
gtattggctaccggctacgaagagccatccgccattcagcagcaatcgatcccgattatt
ctcgccggtcacgatatgatcggtcaggcgcagacaggtaccggtaaaaccgctgccttc
gcactgcctatcctgaaccgcatcgacccgagcaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagctaccgcttttgaaacctacgccaagcag
atgccgggcgttaccgtggtggccgtatatggtggtgccccaatgggcccacaattgaaa
gcaatccgcaacggcgcgcaaatcgtcgtcgctacccctggccgtctgtgcgaccacctg
cgccgcgacgagaaagtcctggcaaccgtcaaccacctggtgctcgacgaagccgacgaa
atgctcaagctgggcttcatggacgacctcgaagtgatcttcaaggccatgccggaaagc
cgtcagaccgtgctgttctcggcgaccctgccagcttcgatccgcgccattgccgaacgt
cacctgcgtgacccgaagcacgtcaagatccagagcaagacccagaccgtaaccgcgatc
gaacaagcccacctgatggtccacgccgaccagaaggtttccgctgtcctgcgtttgctg
gaagtggaagagttcgacgcactgatcgctttcgtgcgtaccaagcaagctaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtcatcgactcgctcaaggatggccgtctggacatcgtcgtc
gctaccgacgttgctgcccgtggtctggacgtaccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgacccggagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcgctgctgctggttaccccgcgtgagcgtcgcatgctgcaggtgatc
gagcgtgttaccggtcagaaggttgctgaagttcgtctgcctaacgcccaggccgttctc
gatgcgcgcatcaagaagctgaccaacagcctggcgccgctggttgctgatgccgaatcg
acccacggcgatctgctcgatcgtctgaccgccgacatcggttgcagcccgcgtgccctg
gccgcagccctgctgcgcaaggctaccaacgctcaggcgctgactctggaagctgtcgag
aaagagcagccgctggttccgacctacaccccgcgtgagcgcactggcgagcgtccagag
cgtggcgagcgtgagcgtcgtgcgccaatgccgctgggcgaaggtcgtgcccgctgccgt
accgcgctgggtgcgcgtgacggtatcgctgccaagaacctgctcggcgccatccttaac
gaaggcggcctggcccgcgaagcaatcggccgcatccaggtgcgcgacagcttcagcctg
gtcgagctgccggaagaaggtctggagcgtctgctggccaagctcaaggacacccgcgtt
gccggtaagcagctgaagctgcgccgctaccgcgaagactga
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