Pseudomonas alkylphenolica: PSAKL28_16390
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Entry
PSAKL28_16390 CDS
T03238
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
palk
Pseudomonas alkylphenolica
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palk03032
]
PSAKL28_16390
03400 DNA repair and recombination proteins [BR:
palk03400
]
PSAKL28_16390
Enzymes [BR:
palk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PSAKL28_16390
DNA replication proteins [BR:
palk03032
]
Prokaryotic type
DNA Topoisomerases
PSAKL28_16390
DNA repair and recombination proteins [BR:
palk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PSAKL28_16390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AIL60864
UniProt:
A0A077FAM2
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All DBs
Position
1805900..1808512
Genome browser
AA seq
870 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGSQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKARKQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWSKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKDAK
VRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYTVAKREDRPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVEMARSYIESEFGKKYLPEAPI
VYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTTV
SVTAGDFELRAKGRILKFDGYTRVLPQQSKPGDDDVLPEMNQGEVLKLIQIDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFSNKLKLAEDGEKGMRANQPTLT
NIACKDCGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVL
LNKHRCPICSTAMDAYLLDEKRKLHICGNNPDCTGYEIEEGNYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNAECKNTRKLLKSGEAAPPKMDAVKMPELKCEKVNDTYVLRDGA
SGLFLAASQFPKNRETRAPLVIEIIPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVEGKPTGWRAFYDGNAWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ctgggcagccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggccagcgccagcaaggagccagccgccaagcgcggcaaggccgccgctggtgaa
gcgccagccctgtcgccaaaagaaaaggcgcgcaagcaactggtcgcgcgcatgggagtt
gatccggaccacggctggaaagccaagtacgagatccttccgggcaaggaaaaggtcatc
gaagaactgcgtcgtctggccaaagatgccgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacagccgc
tacaagcgtgtggtgttcaacgaaattaccaagaaagccatccaggaagcgttctcgcag
ccaggcgagctggatatcgatcgggtcaatgcccagcaggcgcgtcgcttcctcgaccgc
gtggtgggttacatggtctcgccactgctgtggtcgaagatcgcccgcggcctgtctgcc
ggtcgcgtgcagtcggttgcagtgaaactggtggttgagcgagagcgcgagatccgtgcc
ttcatcccggaagaatactgggaagtgcatgctgatctgggtactgccaaggacgccaag
gtgcgtttcgaagtagcgcgggagaagggcgaagccttcaagccgctcaacgaagcccag
gccatggcggcactggagaagctcaagtcttccagttacaccgtcgccaagcgtgaagac
cgcccgaccagcagcaaaccgtcggcgcccttcattacctccaccctgcagcaggccgcg
agcaaccgtctgggcttcggggtgaagaagaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacttatatgcgtaccgactcgaccaacctttcggtcgatgcggtggaa
atggcccgcagctatatcgaaagcgagttcggcaagaagtacctgcctgaagcgccgatc
gtctatggcagcaaagagggtgcccaggaggcgcacgaagcgattcgtccttccgacgtc
aacacccacccgaccaaactcagcggcatggagcgtgatgccgagcgtctgtacgagctg
atctggcgccagttcctggcctgccagatgccaccggcgcagtacctgtcgaccaccgtc
agcgtcaccgctggcgacttcgagctgcgcgccaagggccgtatcctcaagttcgacggt
tacacccgtgtgctgccgcaacagagcaagccgggcgatgacgacgtgctgccggagatg
aaccagggcgaagtgctcaaactgatccagatcgacccgagccagcacttcaccaagccg
cctgcgcgttactccgaagccagcctggtcaaggaaatggaaaagcgcggcattggccgt
ccttccacttacgcggcgatcatttcgaccattcaggatcgcggctacgtgaccctgcat
aaccgtcggttctattccgagaagatgggcgacatcgtcaccgagcgcctgtccgagagc
ttctccaacctgatggactacggcttcaccgccggcatggaagagaacctcgacgatgtg
gcccagggcgagcgcgactggaaaaacgtgctggacgagttctacggcgatttcagcaac
aagctgaagctggccgaggatggcgagaagggcatgcgtgccaaccagccgaccctgacc
aacatcgcgtgcaaggattgcggtcggccgatgatgattcgtaccgcatctaccggtgtg
ttcctcggctgctcgggctacagcctgccgccaaaagagcgttgcaaggccactgtgaac
ctggtgccgggcgatgaaatcgcggccgacgacgagggtgaatcggaatcgcgcgtgctg
ctcaacaagcaccgttgcccgatctgctcgacagcgatggatgcttacctgcttgatgag
aagcgcaagctgcacatctgcggtaacaaccctgattgcaccggctacgagatcgaagaa
ggcaactaccgcatcaagggctacgaagggccgagcctggagtgcgacaagtgcggtagc
gaaatgcagctcaagaccggccgtttcggcaagttcttcggctgcaccaacgccgagtgc
aagaacacccgcaagctgctcaagagcggcgaagcggcgccgccgaagatggatgcggtg
aagatgccggagctcaagtgcgagaaggtcaacgatacctacgtgctgcgtgatggcgct
tcgggtctgttcctggcggccagccagttcccgaaaaaccgcgagacccgtgcaccgctg
gtgatcgagatcattccgcataaagacgaaatcgatccgaagtaccacttcctctgcgaa
gcgccgaagaaggatcctgatggtcgtccggccgtgatccgctacagccgcaagaccaag
gagcagtacgtgcagaccgaggtggagggtaagccgactggctggcgcgccttctacgac
ggcaatgcctggaaggtcgaagacaagcgctga
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