Pseudomonas alkylphenolica: PSAKL28_23090
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Entry
PSAKL28_23090 CDS
T03238
Name
(GenBank) DEAD/DEAH box helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PSAKL28_23090
09124 Replication and repair
03420 Nucleotide excision repair
PSAKL28_23090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palk03021
]
PSAKL28_23090
03036 Chromosome and associated proteins [BR:
palk03036
]
PSAKL28_23090
03400 DNA repair and recombination proteins [BR:
palk03400
]
PSAKL28_23090
Enzymes [BR:
palk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PSAKL28_23090
Transcription machinery [BR:
palk03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PSAKL28_23090
Chromosome and associated proteins [BR:
palk03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PSAKL28_23090
DNA repair and recombination proteins [BR:
palk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PSAKL28_23090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
DUF6630
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AIL61522
UniProt:
A0A077F7L8
LinkDB
All DBs
Position
2557125..2559386
Genome browser
AA seq
753 aa
AA seq
DB search
MSYRVAVRALCEFSAKVGDLDLRFTPSPTAQEGISGHQRVVARRGPEFEAEISLEGQFGN
LQVRGRADGYDPQLNRLEEIKTYRGDLARQPDNHRQLHWAQARVYGWLLCQQRQLSEITL
ALVYLDVDSDSQTLIEQRCSALELEQYFNSQCAIFLHWAEQQVQRVALRDGGLQALAFPY
GQMRRGQRDLAETVYKAVSTGRCLMTQATTGIGKTLGTLFPLLKAMVPQQLDKIFFLTAK
TPGRALALEALHQLHDSAPKLALRSLELVARDKACEYPGTACHGEACPLARGFYDRLPAA
RQAAQALTILDKAALREVALAHQVCPYYLGQEMARWVDVLVADYNYYFDQSALLYGLAQV
NQWRVAVLVDEAHNLVERARQMYSASLDQWQLQALRRSKPAGMGSALDRLNRQWNTLHKA
QVAPYQVIEALPEAFLKALQQCVGLIQEQLNQQPTGLDPALLQFFFDALQFIRVSELFDA
HYLFDISKREGPGKRSLSTLCLRNVVPAAQIGPRMASARSVTLFSATLSPRHYYADLLGM
PADTAWLEVASPFAAEQLRVQVVSHVSTRYQHRAASVAPIAELIAAQFAEAPGNYLAFFS
SFEYLQQVAAMLAASHPHIVQWCQAPGMDETQRQGFLQRFEPQGRGVGFAVLGGAFAEGV
DLPGTRLIGAFVATLGLPQVDPVNEQIKQRMAQLFGAGFDYTYLYPGVQKVIQAAGRVIR
GTDDRGMVMLIDDRFAEPRVQGMFPAWWASQQK
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcgcgtggcagtgcgggcattgtgcgagttcagcgccaaggttggcgatctg
gacttgcgcttcactccgtcgcccaccgcccaggagggcatcagcggccatcagcgggtg
gtggccaggcgtgggccggaattcgaggccgagatcagcctggaggggcagtttgggaac
ttgcaggtgcgcggccgggccgatggctatgacccgcaactcaatcgcctggaggagatc
aagacctaccgcggcgacctggcgcgtcagccggacaatcatcggcagttgcactgggcc
caggccagagtctatggctggttgctctgccagcaacgtcagctcagcgaaatcactctg
gccctggtgtacctggatgtcgacagcgatagccagaccctgatcgaacagcgctgcagt
gcgctggagcttgagcagtacttcaacagccagtgcgcgatcttcctgcactgggccgaa
cagcaagtacagcgggtggccttgcgcgacggtggactgcaggcactggcctttccctat
ggtcagatgcgccgtggtcagcgcgatcttgccgagactgtgtacaaggcggtgagtacc
gggcgctgcctgatgacccaggccaccaccggtattggcaagaccctcggcaccctgttc
ccgttgctcaaggccatggtcccgcagcagctggacaaaatcttctttctcaccgccaag
acacccggccgtgccctggccctggaagccctgcatcagctccacgacagtgctcccaag
cttgccctgcgcagcctggaactggtggcccgcgacaaagcctgcgagtaccccggcacg
gcgtgccatggtgaggcctgccccttggccagaggcttctacgaccgtctgcccgctgct
cgccaggcggcccaggcgctgaccatcctcgacaaggccgcattgcgcgaggttgccctg
gctcatcaggtctgcccttattacctggggcaggagatggcgcgttgggtcgatgtgctg
gtggccgactacaactactatttcgaccagagtgctttgctctatggtctggcccaggtc
aaccagtggcgggtggcagtgttggtggatgaggcgcacaacctggtggagcgggcacgg
cagatgtacagcgccagcctcgatcaatggcagttgcaggccttgcgccggagcaagccg
gcaggcatgggcagtgcgctggatcgcctgaaccgtcagtggaataccctgcacaaggcg
caggtggcgccttatcaggtgatcgaggcgttaccggaggcgttcctcaaggcgttgcag
cagtgtgtcggtctgatccaggagcaactcaaccagcaacccaccgggcttgatccggcg
ctgttgcagtttttcttcgatgcgttgcagttcatccgcgtcagtgagctgttcgacgcc
cattatctcttcgatatcagcaagcgcgaggggccgggcaaacgcagtctgtcgaccttg
tgcctgcgcaatgtggtaccggcggcacagatcggcccgcggatggcgagcgcccgtagc
gtcacgttgttttccgcgaccctgagcccaaggcactactacgccgacttgctcgggatg
ccggccgacaccgcctggctcgaagtggcttcaccctttgccgccgagcaattgcgcgtg
caggtggtcagccatgtctcgacccgttatcagcatcgagccgcctcggtggcgccgatc
gccgagctgattgctgcgcagtttgccgaagcgcccggtaactatctggcgttcttcagc
agtttcgagtacctgcaacaggtggctgcaatgctggccgcaagccatccgcacatcgtc
cagtggtgccaggcgccggggatggacgagacgcagcgccagggatttttgcagcgcttc
gagccccaggggcgtggtgttggctttgccgtgctgggtggggcctttgccgagggcgtc
gatctgccgggcacacgcttgatcggcgcctttgtcgccaccctggggctgccgcaggtc
gacccggtgaacgagcagatcaagcaacgcatggcccagctgttcggcgccgggttcgac
tacacctacctgtatcccggggtgcagaaggtcatccaggcggctgggcgggtgattcgc
ggcacagacgacaggggcatggtcatgctgatcgacgatcgctttgccgagccgcgggtg
cagggcatgtttccggcctggtgggcgtcgcagcagaaataa
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