Pseudomonas alkylphenolica: PSAKL28_38600
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Entry
PSAKL28_38600 CDS
T03238
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSAKL28_38600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palk03019
]
PSAKL28_38600
03400 DNA repair and recombination proteins [BR:
palk03400
]
PSAKL28_38600
Enzymes [BR:
palk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSAKL28_38600
Messenger RNA biogenesis [BR:
palk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSAKL28_38600
DNA repair and recombination proteins [BR:
palk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSAKL28_38600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
Sigma70_r4_2
ResIII
GerE
HTH_23
Sigma70_r1_2
HTH_31
Motif
Other DBs
NCBI-ProteinID:
AIL63010
UniProt:
A0A077FES7
LinkDB
All DBs
Position
complement(4229637..4231772)
Genome browser
AA seq
711 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIECVAKGGDALVLMPTGGGKSLCFQVPALLRPGLA
VVVSPLIALMEDQVATLDELGVAAASLNSTLSAEQQRELAGRIRRGEVKMLYLAPERLVQ
PRMLDFLRTLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPQVPRIALTATADMRT
REEIVTRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRGNAGIVYCLSRKK
VDDVAAYLCDQGFPALPYHAGLPAETRASNQRRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHK
LDAMLALCEETRCRRQILLNYFDEELPQPCGHCDNCIDGVQTWDATEPARQALSAVYRTG
QRYGVGHLVDVLLGRDNEKIRNFGHEKLAVYGVGKARSEGEWRSLFRQLVARGLADIDLE
GYGGLRLSDSCRPLLRGEVSLELRRDLKPQTSSKSSGSGGSPASQLVRGEEREQWEALRA
LRRKLAEEHGVPPYVIFPDSTLLEMLRSQPGSLSEMAQVSGVGARKLERYGAAFLDVLGG
AAEAPPQVADLRHELTSLARAGMTPAQIAGQLNCSEKNVYSMLAEAIGRQQLSLEQALDL
PEDLLAEVQDAFLDGEGELPPVSAIAEQFGARVPEGVLYCVRAALAAEFEM
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcagcgcgtcctcaaggacatcttcggctacgacagctttcggggg
cgccagggggcgatcatcgaatgtgtggccaagggtggcgatgcgctggtactgatgccc
acagggggcggcaagtccctgtgctttcaggtaccggcgctgttgcgcccgggcctggca
gtggtggtgtcaccgctgatcgcgctgatggaagaccaggtggcaaccctcgatgaactg
ggtgtggccgccgcctcgctgaactcgaccctgagcgctgagcagcagcgagagcttgcc
gggcgcattcgccgtggcgaagtgaagatgctctacctggcaccggaacgtctggtgcag
ccgcgcatgctggatttcctgcgtaccctggatatcgccttgttcgcgatcgacgaagcc
cactgtgtctcgcaatggggtcacgacttccgtcccgagtacctgcaactggggcaactg
gccgagctgttcccgcaggtgccacgtattgccctgaccgccaccgcggacatgcgtacc
cgcgaagaaatcgtcacgcgcctgcacctgcagaatgccgagcgtttcctgtcgagcttc
gaccggccgaacatcttctaccgtatcgtgcccaaggagcagccgcgcaagcagttgctg
gcgttcctcagtgagcgtcgcggcaacgccggtattgtctattgcctgtcacgcaagaag
gtcgacgatgttgcggcctacctgtgcgaccagggcttcccggcgctgccgtatcacgcc
ggtctgcctgccgagacccgcgcgtccaaccagcgccgcttcctcaatgaggaaggcctg
atcatggtcgccaccatcgccttcggcatgggcatcgacaaacccaacgtgcgcttcgtt
gcccacctggacctgcccaagtcgctggaagcctactatcaggaaaccggccgcgccggc
cgcgatggcctgccagccgatgcctggatggcctacgggctgcaggacatggtgatgctc
aagcagatgctgcagaactccgagggtgatgagcgccacaagcgcatcgagcagcacaag
ctcgacgccatgctcgcgctctgtgaagaaacccgctgccgccggcagatcctgctcaac
tacttcgatgaagaactgccgcagccttgcgggcattgcgacaactgcatcgatggggtg
caaacctgggacgccacggaacctgcgcgtcaggccctgtcggcggtgtaccgcaccggc
cagcgctacggtgtcggccacctggtggatgtattgctggggcgcgacaacgagaaaatc
cgcaacttcggccatgaaaaactggccgtgtacggcgtcggtaaggcccgctctgaagga
gagtggcgctcgttgttccgccagctggtcgcccgcggtctggccgatatcgacctggaa
ggttacggcggcctgcgcctgtccgacagctgccgacctttgttgcgcggagaagtgagc
ctggagttgcgccgcgacctcaagccgcagaccagcagcaaaagcagcggcagcggcggc
agcccggccagtcagctggtgcgtggcgaggagcgcgaacaatgggaagcgctgcgtgcg
ctgcggcgtaagctggccgaggagcatggcgtgccgccttacgttatcttccccgattcg
accttgctggagatgctgcgcagccagccgggcagcctcagcgaaatggcccaggtcagt
ggcgtcggtgcgcgcaagctggagcgctacggcgcggcgttcctcgacgtactgggcggt
gccgccgaggcgccaccgcaggttgccgacctgcgccacgagctcaccagcctggcccgt
gccggcatgaccccggcgcaaatcgccgggcagttgaactgcagtgaaaagaacgtctac
agcatgctcgccgaggccattggccgtcagcagctgtcgctggagcaggctctggacttg
ccggaagacctgctcgccgaagtgcaggatgctttccttgatggcgagggcgaattaccc
ccggtatcggcgattgccgagcagttcggtgcccgtgtaccggagggggttctatactgc
gttcgagcggcgttagccgctgaattcgagatgtag
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