KEGG   Pseudomonas alkylphenolica: PSAKL28_39530
Entry
PSAKL28_39530     CDS       T03238                                 
Name
(GenBank) cyclic nucleotide-binding domain protein
  KO
K10914  CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
Organism
palk  Pseudomonas alkylphenolica
Pathway
palk02020  Two-component system
palk02024  Quorum sensing
palk02025  Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:palk00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PSAKL28_39530
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PSAKL28_39530
   02025 Biofilm formation - Pseudomonas aeruginosa
    PSAKL28_39530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:palk03000]
    PSAKL28_39530
Transcription factors [BR:palk03000]
 Prokaryotic type
  Helix-turn-helix
   CRP/FNR family
    PSAKL28_39530
SSDB
Motif
Pfam: CAP12-PCTIR_TIR cNMP_binding TIR_2
Other DBs
NCBI-ProteinID: AIL63100
UniProt: A0A077FF38
LinkDB
Position
4328813..4329718
AA seq 301 aa
MIERFEGVAGRPALEEVLLEQKLVLGNETLAKRLAQAGSLIELEQDQVLIEQGGQDTDVF
FIITGQLKIKVHDREVAIRGQGEHVGEMSALVVTAKRSATVVATESSVVLKVSAVDFKAA
ANDFPRIWQYVTRELVERLHQRNALVRPSHKSARVFIISSKEALPIAREIERQLEHDTFF
VKIWTEGTFRASKYTIESLEEQLDESDFAIAIAQPDDEVASRGQSQGAPRDNVIFELGMF
VGRLGRMRSILLEPRGDEVRLPSDLKGLTTITYRPPSDKEQAKLGPACTSLREIFNELGP
R
NT seq 906 nt   +upstreamnt  +downstreamnt
atgattgaacgatttgaaggtgttgcgggccggccagcccttgaagaggttttgctagag
cagaaattggttctcggcaatgaaacgctggccaaacgtctggcgcaggctggctccttg
attgagctagagcaagatcaggttctcattgagcagggagggcaggataccgacgttttt
tttatcatcacggggcaactcaaaatcaaagttcacgaccgggaagtggcaatccgtgga
caaggagagcacgtcggggaaatgtctgcattggtggtgacggcgaaacgttcagcgacc
gttgtcgctacagaatcttcggtcgtattgaaggtatcggctgtcgactttaaagcggca
gcaaacgatttcccccgcatttggcaatacgtcacccgtgaactagttgaacggctgcat
caacgcaacgctttggtgcgaccttcccacaaatcagcccgagtgttcatcatctcttcc
aaagaggcgttgccgattgcacgcgagatcgaacgtcagctcgagcatgacacgttcttt
gtcaaaatctggaccgaaggtacgtttcgcgcgtcgaagtacaccattgaaagtctggag
gaacagctggacgaaagcgattttgctatcgcaatcgcccagcccgacgacgaagtggca
agccgtggccaatcgcaaggcgcaccacgtgacaatgtgatttttgaactcggcatgttc
gtcggccgtcttggcagaatgcggtcgattctcctagagcccaggggcgatgaagttcgc
cttccttcagacctgaaaggtctcacaaccatcacctaccgcccgccctcagacaaagaa
caagcaaagctggggcccgcctgcacctcgctgcgggaaattttcaacgaactaggcccg
cgataa

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