Pseudomonas alkylphenolica: PSAKL28_40950
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Entry
PSAKL28_40950 CDS
T03238
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03030
DNA replication
palk03430
Mismatch repair
palk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSAKL28_40950
03430 Mismatch repair
PSAKL28_40950
03440 Homologous recombination
PSAKL28_40950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palk03032
]
PSAKL28_40950
03400 DNA repair and recombination proteins [BR:
palk03400
]
PSAKL28_40950
Enzymes [BR:
palk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSAKL28_40950
DNA replication proteins [BR:
palk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSAKL28_40950
DNA repair and recombination proteins [BR:
palk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSAKL28_40950
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AIL63242
UniProt:
A0A077FCY2
LinkDB
All DBs
Position
complement(4480872..4484393)
Genome browser
AA seq
1173 aa
AA seq
DB search
MSASFVHLRLHTEFSLVDGLVRIKPLAKALASMNMPAVAVTDQSNMCSLVKFYKNAMGSG
IKPICGADLWLANRDPDAPLSRICFLAMDAKGYRNLTELISRGWVEGQRNGLVVIERDWI
PAASEGLIALSAAKEGDIGMALLNGNPDEAEALLQDWMAMFPDRFYVEVQRTNRAGDEEY
LHAAVALADKFNAPLVATNDVRFIKQSDYDAHETRVCIGEGRALDDPRRSRNYSDQQYLK
SPEEMAELFSDLPDAVANTVEIAKRCNIQVQLGKHFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
ADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EMLRDFLKTDEDAKEIWDMALKLEGVCRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKKGLDDLNIDFIPLDDKKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCASNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVTLIEEVRSMKLRLDAPDVNTSDFKFTVNDDGRIVYGLGAI
KGVGEGPVEAIVEARRDGPFKDLFDFCERVDLKRINKRTLDALIRSGALDRLGPYFHDEL
KAYQANIDRNRAVLLSTMEEAIKAAEQTARTADSGHVDLFGGLFEEADADVYANHRKARE
LTLKERLRGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFVTLDDRSGRIEASLFADTFMAAQALLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKVHSDALKGDRLTWLGELFKRHRGACPITMEYTGSDARAM
LQFGESWRIDPADGLIQALRDQFGRENVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcttctttcgttcatcttcgcctgcacactgaattctccctggtcgatggcctg
gtgcggatcaagccgctggccaaggcattggcctcgatgaacatgccggccgtagcggtt
accgaccagagcaacatgtgctcgctggtcaagttctacaagaacgccatgggttcgggg
atcaagccgatctgtggcgccgacctgtggctggccaatcgcgatcccgacgcgccgctg
tcgcgcatctgttttctggccatggacgccaagggttatcgcaacctcaccgagttgatc
tctcgcggttgggtcgaaggtcagcgcaatggcctggtggtgatcgagcgtgactggatc
cccgcagccagcgaggggctgatcgccctgtcggcagccaaagagggcgatatcggtatg
gcgttgctcaatggcaaccctgatgaagccgaggccttgctgcaagactggatggcgatg
ttccctgatcgcttttatgtcgaagtgcagcgcaccaaccgcgctggcgatgaagagtac
ctgcatgctgcggtcgccctggccgacaagttcaatgcaccgctggtagcgaccaacgat
gtgcgcttcatcaagcagtcggattacgacgcccatgaaacccgcgtatgcatcggtgaa
ggccgcgccctggacgacccgcggcgttcacgcaactacagtgaccagcaatacctgaaa
agcccggaagaaatggccgagctgttcagcgacctgcctgacgcggtggccaacaccgtg
gagattgccaaacgctgcaacatccaggtgcagttgggcaaacacttcctgcctgatttc
ccgacgcccaacggcatgggcattgacgactacctgcggcatgtctcccatgaaggcctg
gaagagcgtctggcggtgctgtggccgaaagagaccacgcccaactacgaagagaagcgt
caggtctacctcgaccgcttgaagttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgttatggacttcatcaagtgggccaagaacaacggcgtgccagta
ggcccgggccggggttcgggtgccggctcgctggtcgcctacgtgctgaagatcaccgac
ctcgatccgctggcctacgacttgctgttcgaacgtttcctcaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggatggccgcgaccgggtgatcgagtacgtg
gccgacgcctatggtcgcaacgcggtgagccagatcatcaccttcggtaccatggccgcc
aaggcggtggtgcgcgacgtggcgcgggtccagggcaagtcctacggcctggccgatcgc
ctgtcgaagatgatcccgttcgaagtgggcatgaccctggagaaagcctacgagcaggaa
gagatgctccgcgacttcctcaagaccgatgaggatgccaaggaaatctgggacatggcc
ctcaagctcgagggtgtctgccgcggtaccggtaagcacgccggtggtgtggtcatcgcg
ccgaccaagctcaccgatttctcgccgatcgcctgtgatgaagaaggcggcggcctggtt
acccagttcgacaaggacgacgtcgaggcggcggggctggtgaagttcgacttcctcggt
ctgcggaccctgaccatcatcaagtgggcgatggaaaccatcaaccgcgagcaggccaag
aaaggcctggatgacctgaacatcgatttcatcccgctggatgacaagaaaacctacgaa
ctgctgcaaaaggctgagaccactgcggtgttccagcttgaatcgcggggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagacctgatcgcactggtcgcgctgttc
cgtcccggcccgctgcaatcgggcatggttgacgacttcatcaaccgcaagcacggccgc
gccgaactggcttatccgcactcggactatcagtacgaaggcctcaaaccggtgcttgcg
ccgacttacggcatcatcctgtaccaggaacaggtgatgcagattgcccaggtgatggct
ggctacaccctcggcggtgcggacatgctgcgtcgcgccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggcggtttcattgagggttgcgccagcaacaatatcgacccg
gacctggcaggtaacatcttcgacctggtagaaaagttcgcaggttacggcttcaacaaa
tcccactccgccgcctatggcctggtctcctaccagaccgcctggctgaaaacccattat
ccggctcccttcatggctgcggtactgtcggcggatatgcacaacaccgacaaggtcgtg
accctgatcgaggaagtgcgcagcatgaagctgcgcctcgatgcgccggacgtgaacacc
tccgacttcaagttcacggtcaatgacgacggtcgtatcgtctacggcctgggggcgatc
aagggcgtcggcgaggggccggtagaggccatcgtcgaagcgcgccgcgacggtccgttc
aaggacctgttcgacttctgcgaacgtgtcgacctcaagcgtatcaacaagcgtaccctc
gacgcgctgattcgcagcggcgccctggaccgtctggggccgtacttccatgacgagctc
aaggcctaccaggccaacatcgaccgtaaccgcgcggtgttgctgtcgaccatggaagag
gcgatcaaggccgccgagcagaccgcccgtactgcggacagtggccacgtagacctgttt
ggcgggctgttcgaggaagcggacgccgatgtctacgccaaccatcgcaaggcccgcgag
ctgaccctcaaggagcgtctgcgtggtgaaaaggacactttgggcttgtacctgaccggt
cacccgattgacgaatatgaaggtgagattcgccgcttcgcgcgtcaacgcatcatcgac
ctgaagccggctcgcgacacccagacagtggccggcatgatcatcgccctgcgggtaatg
aagaacaaaaagggtgacaagatgggctttgtcaccctcgacgaccgttctggacgtatc
gaggcctcgttgttcgccgacaccttcatggccgcccaggccctgttgcagaccgacgcg
atggtggtggtcgaaggcgaggtcagcaatgatgacttctccggcggcctgcgcctgcgg
gtcaagcgggtcatgagcatggaagatgcgcggaccaacctggccgagagtctgcgcctg
aaagtccacagcgacgccctcaagggcgatcgcctgacctggttgggcgagctgttcaag
cgccatcgcggggcttgtccgatcaccatggagtacaccggcagcgatgcccgggcgatg
ttgcagttcggcgaaagctggcgaatcgacccggccgatggcctgattcaggcactgcgt
gaccagttcgggcgtgagaacgtctttttgcaatatcgatga
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