Pseudomonas alkylphenolica: PSAKL28_46680
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Entry
PSAKL28_46680 CDS
T03238
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PSAKL28_46680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palk03400
]
PSAKL28_46680
Enzymes [BR:
palk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PSAKL28_46680
DNA repair and recombination proteins [BR:
palk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSAKL28_46680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
AAA_11
UvrD_C_2
Viral_helicase1
Helicase_RecD
SH3_13
AAA_22
UvrD-helicase
AAA_17
AAA_28
AAA_16
SLFN-g3_helicase
TraI_hel_assoc_N
AAA_25
NTPase_1
PhoH
T2SSE
nSTAND3
NACHT
AAA_5
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AIL63808
UniProt:
A0A077FEZ1
LinkDB
All DBs
Position
complement(5080842..5082923)
Genome browser
AA seq
693 aa
AA seq
DB search
MSRTLDDLLPTPLDAEHLAALEPLSDSADLLALLDRWVERGWLRALDRAFVGFLEERDPG
GDPLVLLAAALASHQLGHGHVCLDLAETLAEPDFALSLPPEGDALAGPLLLPSQLLEQLA
LSTWLQRLASSRLVANGACVEEASRPLVLSAQRLYLRRYWAYERQIDSALRQRLEQVEPT
PADLAARLAQLFDGGSQAGQVDWQKLACALATRGAFSIITGGPGTGKTTTVVRLLALLQA
PAVEAGRPLRIRLAAPTGKAAARLTESIGQQVERLAVEAQVRENIPTDVSTVHRLLGSRP
GSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLAALPPHARLVLLGDKDQLASVEAGA
VLGDLCRDAEAGRYSAQTQAWLEQVSGETLAGSELLAGTAEQYPLAQQVVMLRFSRRFGE
SSGIGRLARLVNLQDAEQARALLQQTQDDVFGLTLRGEQDRALDRLLLDGLGRGNEGPQG
YRSYLQIIGRQRPAQTTPVDDPRWEAWAMAVLQGFETFQLLCAVRKGPWGVEGLNQRVGR
VLGAAGLIDVEQPWYEGRPVLMTRNDYGLGLMNGDIGIALRLPDEQQPGQQVLRVAFARN
DGRGGVRFVLPSRLNEVETVFAMTVHKSQGSEFTHTALVLPDALNPVLTKELIYTGITRA
KSCFTLIEPRQGVFEDAVRRKVKRISGLMLEQV
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtaccctcgacgacctgctgccgacgccactggatgccgagcatcttgccgca
ctcgagccattgagtgacagtgccgacctgctggcattgctcgatcgttgggtcgaacgt
ggctggctgcgcgcactggaccgggccttcgtcggctttcttgaagaacgcgatccggga
ggcgacccgctggtgttgctggcagcggccctggccagtcaccagctgggtcatggtcat
gtctgtctggacctggctgagaccctggccgaacctgactttgccctgtcgttgcccccg
gaaggcgatgccctggcaggtcccttgctgctgccgtcgcagttgcttgagcaactggcg
ctgagcacctggttgcagcgcttggccagcagtcgtctggtcgccaatggtgcttgcgtc
gaagaggcttcgcggcctttggtgctcagtgctcaacgtttgtatctgcgccgctactgg
gcctatgaacggcaaatcgacagcgccttgcgtcaacgtctggagcaggtcgagccgacc
ccggccgatttggcggcgcgcttggcgcaactgttcgacggtggcagccaggcgggacag
gtggactggcaaaagctggcctgcgccctggccacccgaggtgctttcagcatcattacc
ggcggcccgggtaccggcaagaccaccacggtggtgcgcttgctggccttgctccaggca
ccagccgtggaggccggacgtcccctgcgcattcgcctggcagcacccaccggcaaggcc
gcggcgcggctgaccgagtccatcggtcagcaggttgagcgcctggccgtcgaagcccag
gtacgggaaaacatccccaccgatgtctcgacggtgcaccgcttgctcggtagccgtccg
ggctcgcggcattttcgtcaccatgcgggtaaccccttgcccctggatgtgctggtggtc
gacgaagcctcgatgattgacctggaaatgatggccaacttgctggccgcgctgccgcct
cacgcccgtctggtgttgctgggtgacaaggaccagttggcctcggtggaagccggcgcc
gtgcttggtgacctgtgccgggatgccgaagctggccgctatagcgcccagacccaggcc
tggctggagcaggtcagcggtgaaaccctggcgggtagcgaactgctggcgggtactgcc
gagcagtatccgttggcgcagcaagtggtgatgttgcgcttttcccggcgcttcggtgag
agcagtggtatcggccggctggcgcgcctggtcaacctgcaggacgccgaacaggcacgg
gccctgttgcagcagacacaggatgacgtgttcggcctgaccctgcgtggcgagcaggat
cgcgccctcgaccgtctgctgctcgatggccttggtcgcggcaacgaggggccgcagggc
taccgcagctatctgcagatcattggccggcaacgtccggcgcagaccacgccggttgat
gacccgcgctgggaagcctgggccatggccgtgttacagggtttcgaaaccttccagctg
ctgtgtgccgtacgtaaaggcccatggggcgtcgaggggctgaaccagcgggtcggcagg
gtgttgggcgctgccggcctgatcgatgtcgagcaaccctggtatgagggccggccagtc
ctgatgacccgcaacgactatggcctgggcctgatgaacggtgacatcggcattgccttg
cgcctgcccgatgagcagcaacccggccagcaggtgttgcgggtggccttcgcccgtaac
gatggtcgtggcggtgtgcgctttgtattgcccagccgcctcaacgaggtggaaaccgtg
ttcgccatgaccgtgcacaagtcccaaggttcggagttcacccatactgccctggtgctg
cctgatgcactgaacccggtgttgaccaaagagttgatctacaccggcatcacccgggcg
aaaagctgtttcactttgatcgaaccgcgccaaggggtgttcgaggacgcggtgcggcgc
aaggtcaaacgcatttccggattgatgctggagcaggtatga
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