Pseudomonas alkylphenolica: PSAKL28_48730
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Entry
PSAKL28_48730 CDS
T03238
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSAKL28_48730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palk03019
]
PSAKL28_48730
Enzymes [BR:
palk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSAKL28_48730
Messenger RNA biogenesis [BR:
palk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSAKL28_48730
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIL64013
UniProt:
A0A077FFI0
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All DBs
Position
5327546..5329438
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AA seq
630 aa
AA seq
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MSFASLGLSEALVSAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVETLVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITTGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKAGTV
RIMVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTRQKIPDGDLMGFDASKVEAEKPEVRERPQNNPRGGRGQRADGTNTGNGGRKD
KGKDQGKEKGRDKDKEKTAEKSAGGRQERKPRDNKKPRPQQSAQAGAPSVPANRDPEEFL
DDEVDNFGNRADYVSPYQNKGNQGRNRRPGAPAQAGAGASGQPRSGGGQGRNNNGPRTGT
GGSASGEKRGGSRNGGGGQPRRDGGGARNRRPNSDNQSGEPAVRNPREGQPQPKIMHKES
KIDRFPTAEQLEQLPSRPRGEKPALLTRNR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctctagtcagtgccatcgaggctgctggc
tatacccagcccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgccgcccagacaggtactggtaaaaccggtggtttcgccctgccgatcctc
gaacgcctgtttccaggtggtcacccagacaaatcccagcgtcatggccctcgccagccg
cgggttctggtgctgaccccgacgcgcgaactggccgcccaggtgcatgacagcttcaag
gtttatgcccgtgacctcaaattcgtcagcgcctgcatcttcggtggcgtcggcatgaac
ccacaggttcaggccatggcccgtggcgttgatgtgctggtggcctgcccgggccgtttg
ctcgacctcgccggccaaggcagtgtcgacctctcccacgtcgaaaccctggtactggac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtgaagaaagtcctcgcacgc
ctgccggccaagcgtcagaacctgctgttctcggcgaccttctccaaggacatcaccgac
cttgccgacaagctgctgcacaaccccgagcgcatcgaggttaccccgccgaacaccacg
gtcgagcggatcgaacagcgtgtctaccgcctgccggccagccataagcgtgccctgctg
gcccacctgatcaccaccggcgcgtgggaacaggtactggttttcacccgcaccaagcac
ggcgccaaccgcctggctgaatacctggaaaagcacggcctgaccgccgccgcgatccac
ggcaacaagagccagaatgcccgcaccaaagccctggccgacttcaaggccggcaccgtg
cgcatcatggttgccaccgatatcgctgcccgtggcctggacatcgaccaactgccgcat
gtggtcaacttcgagctgcccaacgtcgaagaagattatgtgcaccggatcggtcgtacc
ggccgtgccggtcgctcgggtgaagcgatctcgctggtcgctccggatgaagaaaagctg
ctcaagagcatcgagcgcgtcacgcgccagaagatcccggatggcgacctgatgggcttt
gatgcctccaaggttgaagccgagaaacctgaagtccgcgagcgtccacaaaacaacccg
cgtggtggccgtggtcagcgtgctgacggcaccaacaccggcaacggcggacgcaaagac
aagggcaaggatcagggcaaggaaaaaggtcgcgacaaagacaaggaaaaaaccgcagag
aagtctgccggtggccgccaggaacgcaaaccacgcgacaacaaaaagcctcgcccgcaa
cagtccgcacaagccggcgcgccatcggtacccgctaatcgtgacccagaagagtttctg
gatgacgaagtggacaactttggtaaccgcgccgactacgtcagcccttaccagaacaag
ggcaaccagggtcgcaaccgtcgccctggcgcacccgcccaggcaggtgccggcgccagt
ggccagccgcgtagcggtggtggccaaggccgcaacaacaatggcccgcgtaccggtaca
ggtggttcggccagcggcgagaaacgcggtggttcgcgtaatggcggcggtggtcagccg
cgccgtgacggcggcggcgcccgcaatcgtcgtccgaacagcgacaatcaatcgggcgag
ccagccgtgcgcaatccgcgtgaaggccagccacaaccgaagatcatgcacaaagagtcg
aagatcgaccgtttcccgactgccgaacagcttgagcaactgccaagccgtccacgtggc
gagaaacctgcactgctgacgcgtaatcgctga
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