Ectopseudomonas alcaliphila: UYA_01455
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Entry
UYA_01455 CDS
T06680
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pall
Ectopseudomonas alcaliphila
Pathway
pall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UYA_01455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pall03021
]
UYA_01455
03019 Messenger RNA biogenesis [BR:
pall03019
]
UYA_01455
Transcription machinery [BR:
pall03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
UYA_01455
Messenger RNA biogenesis [BR:
pall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UYA_01455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
NACHT
S1CSD-TOTE-2
Mor
Motif
Other DBs
NCBI-ProteinID:
APU28449
LinkDB
All DBs
Position
312094..313353
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPIAELLDMAEQMGLENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPTKRLTMEAGNGSTEDITGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELILDRRVSEKRVFPAINI
NKSGTRREELLTGEEELSRMWILRKLLHPMDEIAAIEFLIDKLKATKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaactcaagcaaaagccgattgccgaactgctggacatggccgaacag
atgggcctggaaaacatggctcgttcgcgcaagcaggacatcatcttcgccctgctgaaa
aagcatgccaaaagcggcgaggaaatttccggtgacggcgtgctggagatcctccaggac
ggtttcggcttcctgcgcagcgccgactcttcctacctggccggccctgacgacatctac
gtctcgcccagccagatccgccgtttcaacctgcgtaccggtgacaccatcgtcggcaag
atccgcccgccgaaggaaggcgagcgttatttcgccctgctcaaggtcgacagcatcaac
ttcgaccgtccggaaaacgccaagaacaagatcctgttcgagaacctgacgccgctgttt
ccgaccaagcgcctgaccatggaagccggtaacggctccaccgaggacatcaccggccgt
gtgatcgacctctgcgcgccgattggcaagggccagcgcggcctgatcgtcgccccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcctcgaacatcacccgcaacaacccc
gagtgccacctgatcgttctgctgatcgacgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgaccttcgacgagccgccgacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggatgtg
gtcatcctgctcgactccatcacccgcctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtcctcaccggtggtgtcgacgcccatgccctggagaagcccaagcgcttc
ttcggcgctgcccgtaacatcgaagaaggcggctcgctgaccatcatcgctactgcgctg
gtggaaaccggctcgaagatggacgaagtgatctacgaggaattcaaaggcaccggcaac
atggagctgatcctcgatcgccgtgtttccgagaagcgcgtgttcccggccatcaacatc
aacaagtcgggcactcgtcgtgaagagctgctgaccggtgaagaagagctgtcgcgcatg
tggattctgcgcaagctgctgcacccgatggatgagattgcggccatcgagttcctcatc
gacaagctcaaggccaccaaaaccaacgacgagttcttcttgtcgatgaagcgcaaataa
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