Ectopseudomonas alcaliphila: UYA_01970
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Entry
UYA_01970 CDS
T06680
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pall
Ectopseudomonas alcaliphila
Pathway
pall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UYA_01970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pall03019
]
UYA_01970
Enzymes [BR:
pall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UYA_01970
Messenger RNA biogenesis [BR:
pall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UYA_01970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
APU28548
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All DBs
Position
complement(433254..435128)
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AA seq
624 aa
AA seq
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MSFASLGLSEALVRAVESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKVYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAQRQNLLFSATFSKDITDLAGKLLRNPERIEVTPPNTTVERIEQRVFHLASSHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLMGFDASTVEAERPETREPRQPRGQKQPKAQNAQGGDKPKGERH
GVGRKDKGKDSGKEQKAKPQQQGQGQNRRGQQPRNQSRGAAPAVPPLPPDRDPEEFLDDE
IDNFGNRADYVPVQNKPQGRGRRSGGGSAGNGAAQGQGQRANSNNRQPRSNAGAPPAKNR
GQGGQGRNGGGRGRPADGRITSLDRDELPRAEAAVRNPREKQPIIVHKGSRLDRFPSAEQ
LDELSNSTRPRSEKPALLTRNREE
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggctctagtccgtgcggtcgagtccgccggc
tacacccagcccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctcatggtggcggcccagacgggtacaggtaagacgggcggtttcgccctgccgatcctc
gaacgcctgtttccgggcggtcatccggatcgcgaacaacgtcacggcccgaaacaaccg
cgcgtgctggtgctgacacccacccgcgaactggccgcccaggtgcatgacagcttcaag
gtctatgcccgcgatttgaaatttgtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcaggtccaggccctggccaagggtgtcgacgtgctggtggcctgccccgggcgcctg
ctcgacctggccaaccagaaggccatcgacctgtctcatgtcgaaatcctcgtgcttgat
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtgctggccaaa
ctgccggcgcagcgccagaacctgctgttctcggcgaccttctccaaggacatcaccgac
ctggccggaaagctgctgcgcaaccccgagcgcatcgaggtcacgccgccgaacaccacg
gtcgagcgcatcgaacagcgcgtgttccacctagcctccagccacaagcgtgccctgctc
gcccacctgatcacccagggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctcgccgaatacctcgacaagcacggcctgccggccgtcgcgatccac
ggtaacaagagccagaacgcgcgcaccaaggccctggccgacttcaaggcgaaccaggtg
cgcatcctggtggccaccgatatcgccgcccgcggcctggatatcgaccaactgccgcac
gtggtcaacttcgagctgcccaacgtcgaggaagattacgtgcaccgcatcggccgcacc
ggccgcgccgggcgtagcggcgaggcgatctcgctggtggcgccggacgaggagaagctg
ctcaagagcatcgagcggatgaccaagcagaagatccccgacggcgacctgatgggcttc
gatgccagcaccgtcgaggccgagcgcccggaaacccgcgaaccgcgccagccgcgcggg
cagaagcagcccaaggcgcagaacgcccagggcggcgacaagcccaagggcgagcgccat
ggcgtcggccgcaaggacaagggcaaggacagcggcaaggagcagaaagccaagccgcaa
caacagggtcagggccagaaccgccgtggtcagcagccgcgcaaccagagtcgtggcgct
gcgccggctgttccaccattgcctccggaccgcgacccggaagagttcctcgacgacgaa
atcgataattttggcaaccgtgccgattacgtaccggtgcagaacaagccgcaaggtcgc
ggccgtcgttcaggcggtgggtcggctggcaatggcgctgctcagggccaaggccagaga
gccaacagcaacaacaggcagccccgcagcaacgctggcgccccccccgctaagaatcgt
ggccagggtggtcagggccgtaacggcggtggccgcggccgaccggcggacggtcgcatc
acctcgctggatcgcgacgagctgccacgcgccgaagcggccgtgcgcaacccgcgcgaa
aagcagccgatcatcgtgcacaagggctctcgcctggatcgtttccccagcgccgagcag
ctcgacgagttgagcaacagcactcgtccacgcagcgagaagccggcgctgctgacgcgt
aaccgcgaagagtaa
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