Ectopseudomonas alcaliphila: UYA_03005
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Entry
UYA_03005 CDS
T06680
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pall
Ectopseudomonas alcaliphila
Pathway
pall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UYA_03005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pall03019
]
UYA_03005
03016 Transfer RNA biogenesis [BR:
pall03016
]
UYA_03005
Enzymes [BR:
pall01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
UYA_03005
Messenger RNA biogenesis [BR:
pall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UYA_03005
Transfer RNA biogenesis [BR:
pall03016
]
Prokaryotic type
tRNA degradation factors
UYA_03005
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
OB_Dis3
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
APU28745
LinkDB
All DBs
Position
676936..679443
Genome browser
AA seq
835 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILSHLAERGAPASREQLIEEFGLHTEDQLEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRISGHRDGFGFLVPDDGSDDLFLSPAQMR
LVFDRDRALVRVAGFDRRGRREGGIVEVIERAHESIVGRYYEENGIGFVVADNPKIQQEV
LVTPGRTAGARIGQFVEIKITHWPTQRFQPQGDIVEVIGNYMAPGMEIDVALRSYDIPHV
WPEAVVKEARKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEKNSSRWKLFS
GGWKLYVAIADVSHYVKVGSALDAEAVERGNSVYFPERVVPMLPEELSNGLCSLNPHVDR
LAMVCEMTMSKSGQMVDYKFYEAVIHSHARLTYNKVSLMLEDPKSSEGKSLRSEYKEVLP
HLNQLYALYQVLVAARHERGAIDFETQETRIIFGEGRKIAEIRPTQRNDAHKLIEECMLA
ANVATARFMQDHEIPSLYRVHDGPPPERLEKLKAFLGELGLSLQRGKSKDGPSPKDYQRL
LESIRERPDYHLIQTVMLRSLSQAVYSAQNEGHFGLNYEAYTHFTSPIRRYPDLLVHRAI
RSVVRSKRDTKHVERAGAAVMPKARIYPYDEATLEKLGEQCSMTERRADEATRDVVNWLK
CEFMQDRVGETFAGVITAVTGFGIFVELRDIYVEGLVHVTALPADYYHFDPVHHRLSGER
SGRSFRLGDSVEVKVMRVDLDERKIDFELSQDKAGKGDDARRGGKPSGMGNTDVQKSRDV
KKALLAGAKAGKGASGKGVAGKSASKPAGGARKGSGRGDSAPPAAGKPRKPKAKS
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgcccgcgaggcggaaaaatacgacaac
cccatccccagccgtgagctgattctttcgcatctggccgagcgcggcgcgcctgccagt
cgtgaacagctgatcgaagagttcggtttgcataccgaagatcagctcgaagccctgcga
cgccgactgcgcgcaatggagcgtgatggtcagctcatctatacccgccgtggcacctat
gccccggtggacaagctcgacctgatctgtggtcgcatcagcggtcaccgtgacggcttt
ggcttcctcgtgccggatgacggcagcgacgacctgttcctcagcccagcgcagatgcgc
ctggtgttcgatcgtgatcgggcgttggtacgggtggcaggtttcgatcgccgtggccgt
cgtgaaggcggcatcgtcgaggtgatcgagcgcgcgcacgagagcatcgtcggccgttac
tacgaagagaacggcatcggcttcgtcgtcgccgacaatcccaagatccagcaggaagtg
ctggtcaccccaggacgcactgccggtgcgcgcatcggccagttcgtcgagatcaagatc
actcactggcctacgcagcgtttccagccgcagggcgacatcgtcgaggtgatcggcaac
tacatggcgccgggcatggagatcgacgtggcgctgcgcagctacgacatcccgcacgtc
tggcccgaggcggtagtcaaggaagcgcgcaagctcaagcctgaggtggaggagaaggac
aaggagaagcgcatcgacctgcgccatctgcctttcgtcaccatcgatggtgaagacgcc
cgcgacttcgacgatgcggtctactgcgagaagaacagcagccgctggaagttgttctcc
ggtggctggaaactctacgtggccatcgccgacgtttcgcactacgtcaaggtcggctcg
gcgctggatgccgaggcggtcgagcgcggcaactcggtgtatttccccgagcgcgtcgta
ccgatgctgccggaggagctgtccaacggcctgtgctcgctgaacccgcatgtcgatcgc
ctggccatggtctgcgaaatgaccatgtccaagagcggccagatggtcgactacaagttc
tacgaggcggtgatccactcccatgcgcgcctgacctacaacaaggtcagcctgatgctg
gaagatcccaagagcagtgagggcaagtccctgcgcagcgagtacaaggaagtcctgccg
cacctcaatcagctctacgcgctgtatcaggtactggtcgccgctcgtcacgagcgcggc
gccatcgacttcgagacccaggaaacccgtatcatcttcggcgaagggcgcaagatcgcg
gagatccgcccgacccagcgcaacgatgcgcacaagctgatcgaggagtgcatgctggcc
gccaacgtggccaccgcgcgcttcatgcaggatcacgagatcccctcgctgtatcgcgtg
cacgatggcccgccgccggaacgcctggagaagctcaaggccttcctcggtgagctgggg
ttgtcgctgcagcgtggcaagtccaaggatggtccgtcacccaaggactatcagcgcctg
ctggaaagcatccgcgagcgcccggactatcacctgatccagaccgtgatgctgcgctcg
ctgagtcaggcggtgtacagcgctcagaacgaagggcacttcggcctcaattacgaggct
tacacccacttcacctcgccgatccgtcgctatcccgacctgttggtgcaccgtgccatt
cgcagcgtggtccgttccaagcgcgacaccaagcacgtggagcgtgccggtgcggcagtc
atgcccaaggctcgtatctatccgtacgacgaagcgaccctggaaaagctcggcgagcaa
tgctcgatgaccgagcgccgtgccgacgaagcgacccgcgacgtggtcaactggctcaag
tgcgagttcatgcaggatcgtgtcggtgagacctttgccggtgtgatcactgccgtgacc
ggtttcggcattttcgtcgagctgcgcgacatctacgtcgagggtctggtgcatgtgacc
gcgttgccggccgactactaccacttcgacccggttcaccatcgcctgtccggcgagcgc
agcggccgcagcttccgtcttggcgacagcgtcgaggtcaaggtgatgcgcgtcgatctg
gatgagcgcaagatcgacttcgagctgagccaggacaaggccggcaagggtgatgatgcg
cgtcgcggcggcaaaccgagcggcatgggcaataccgacgtgcagaaaagccgcgacgtg
aagaaggcgctgttggctggtgccaaggccggcaagggtgcgagtggcaaaggtgttgcc
ggcaagtcggcgagcaagccggccggcggtgcgcgcaaaggctccgggcgtggtgacagt
gccccgccagctgccggtaagccgcgcaagcctaaggccaagtcatga
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