Ectopseudomonas alcaliphila: UYA_05420
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Entry
UYA_05420 CDS
T06680
Name
(GenBank) protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO
KO
K09136
ribosomal protein S12 methylthiotransferase accessory factor
Organism
pall
Ectopseudomonas alcaliphila
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pall03009
]
UYA_05420
Ribosome biogenesis [BR:
pall03009
]
Prokaryotic type
ribosomal protein modification factors
UYA_05420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YcaO_C
YcaO
OsmC
Sin3a_C
Motif
Other DBs
NCBI-ProteinID:
APU29200
LinkDB
All DBs
Position
complement(1215599..1217797)
Genome browser
AA seq
732 aa
AA seq
DB search
MEIKVNFLDNLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCQ
TRDIPTENIRLSQNNIVDPENRYAQIFKIQVELPADISEKDRLGILRSIDRCTVKKVVQQ
GPEFIIEEVENLDADAQALLMPVSDTTTYIPGKDLPLEQTIANMSGILAELGMKIEIASW
RNIVPNVWSLHIRDAQSNLCFTNGKGSTKEAALASALGEFIERLNCNFFYNDQFWGEDIA
AAEFVHYPNERWFKPGPKDSLPEEILDEHCLAIYNPDGELRGSHLYDTNSGNTARGICSL
PFVRKSDGQTVYFPSNLIENLYLSNGMSAGNTLAEAQVQCLSEIFERAVKREILENELCL
PDVPQEVLAKYPGIVAGIQGLEEQGFPVLVKDASLGGEFPVMCVTLMNPRTGGVFASFGA
HPSLEVALERSLTELLQGRSFEGLNDLPQPTFDSLALTEPNNFVEHFIDSSGVVSWRFFG
TTPDFEFVEWDFSGEGSDSNEQEAATLFGILEDMGKEVYVATYDDLGANACRILVPGYSE
IYPVEDLIWDNTNKALLFRKDILNLHALSDRELKSLLRNLNNTEVDDYTDITTLIGVEFD
DNTVWGQLTILELKLLINLALKKYDDAKELVEAFLQYNDNTVERGLFYQAVDAVLEIQLD
DELELANYEHNLRRMFGNERMDAVIGSVDGSVRFHGLTPTSMKLEGLDKHLRLIDSYKKL
HAARAKAAGLAG
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaaggtcaactttctcgacaaccttcgcctcgaagccaagttcgatgacttc
acggtgatcgccgatcagccgatccgttacaagggcgacggctcggcgccggggccgttc
gactatttcctggcctcctcggcgctgtgcgcggcgtacttcgtcaagctgtactgccag
acgcgcgacattcccaccgagaacattcgcctgtcgcagaacaacatcgtcgacccggag
aaccgctacgcgcagatcttcaagatccaggtcgagctgcccgccgatatctccgagaaa
gatcgcctggggattttgcgctccatcgaccgctgcacggtgaagaaggtggtgcagcag
ggccccgagttcatcatcgaggaagtggaaaatctcgacgccgacgcccaggcgctgctg
atgccggtgtccgataccaccacctacatcccaggcaaggacctgccgctggagcagacc
atcgccaacatgtcgggcatcctcgccgagctggggatgaagatcgagatcgcctcctgg
cgcaacatcgtgcccaacgtctggtcgctgcacattcgcgacgcgcagtcgaacctgtgc
ttcaccaacggcaagggttcgaccaaggaggccgcgctggcctcggccctgggcgagttc
atcgagcggctgaactgcaacttcttctacaacgaccagttctggggcgaggacatcgcc
gccgccgagttcgtccactaccccaacgaacgctggttcaagccgggcccgaaggattcg
ctacccgaggaaattctcgacgagcactgcctggccatctacaacccggatggcgaactg
cgcggctcgcacctgtacgacaccaactcgggcaataccgcgcgcggcatctgctcgctg
ccgttcgtacgcaagagcgatggccagacggtgtatttcccgtccaacctgatcgagaac
ctgtatctgtccaacggcatgagcgccggcaacaccctcgccgaagcccaggtgcagtgc
ctgtcggagatattcgagcgggcagtcaagcgcgagattctggagaacgagctgtgcctg
ccggacgtgccgcaggaggtgctggccaagtacccgggcatcgtcgccggtatccagggc
ctggaggaacaaggcttcccggtgctggtcaaggatgcctcgctgggcggagaatttccg
gtgatgtgcgtgaccctgatgaacccgcgcaccggcggcgtgttcgcctccttcggcgcg
cacccgagcctggaagtggcgctggagcgcagcctcaccgaactgctgcagggccgcagc
ttcgaaggcctcaacgacctgccgcagccgaccttcgacagcctggcgctgaccgagccg
aacaacttcgtcgagcacttcatcgactccagcggcgttgtctcctggcgcttcttcggt
accacgccggacttcgagttcgtcgagtgggatttctccggcgagggcagcgactccaac
gagcaggaagccgcgaccctgttcggcatcctcgaggacatgggcaaggaggtctacgta
gccacctatgacgacctcggcgccaacgcctgccgcatcctggtgccgggctactcggag
atctacccagtcgaggacctgatctgggacaacaccaacaaggcgctgctgtttcgcaag
gacatcctcaacctgcacgccctgagcgaccgcgagctcaagtcgctgctgcgcaacctc
aacaacaccgaagtcgacgactacaccgacatcaccacgctgatcggcgtggagttcgac
gacaacacggtgtggggccagctgaccatcctcgagctgaagctgttgatcaacctggcg
ctgaagaaatacgacgacgccaaggaactggtcgaggccttcctgcagtacaacgacaac
accgtcgagcgcggcctgttctaccaggcggtcgacgccgtgctggagatccagctggac
gacgagctggaactggccaactacgagcacaacctgcgccgtatgttcggcaacgagcgc
atggacgcggtgatcggctcggtggacggcagcgtgcgtttccatggcctgacgccgacc
agcatgaaactcgaaggcctggacaagcacctgcgcctgatcgacagctacaagaaactg
cacgctgcgcgcgccaaagcagccgggctggccggctga
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