Pseudomonas alcaliphila: UYA_08405
Help
Entry
UYA_08405 CDS
T06680
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pall
Pseudomonas alcaliphila
Pathway
pall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UYA_08405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pall03019
]
UYA_08405
03009 Ribosome biogenesis [BR:
pall03009
]
UYA_08405
Enzymes [BR:
pall01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
UYA_08405
Messenger RNA biogenesis [BR:
pall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UYA_08405
Ribosome biogenesis [BR:
pall03009
]
Prokaryotic type
rRNA processing factors
UYA_08405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
APU29750
UniProt:
A0A1L7FY45
LinkDB
All DBs
Position
complement(1827940..1831026)
Genome browser
AA seq
1028 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GSERHGFLPLKEISREYFSKSPEGGRVNIKDVLKEGQEVIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEEMQ
WDLDYLLQLWSAIKEASTSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEAL
SFIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSI
DINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEK
VREALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLA
ILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPH
FEVQRLRDDSPEALSGQTSYEIAATAETEETAAQPAAATRTLVRQEAAIKAAPRSSAPVA
AEPQAPLAPTKAPEPSLFKGLVKSLVSLFAGKEEEAQPAAVEKKSNERPPREERRNGRQQ
SRNRGGRRDDERKPREERAPREERQAREPREERQPREERQPREERQPREERAPREPREGQ
ENRRERKPREERAPREERVRELREPIAADTDADAGNEQREERAERQPRGERQERQRQPRE
ERQPRAEQTEALQDEALPNEEQLQDDEQDSNDGERPRRRSRGQRRRSNRRERQRDADGNL
IESAENSEAAGNEAQAAAPAAVATAAAVVAESVDSSEAVASEAPVSEAPVVEAPAAQVEE
APAAQPVEAQAEAAVSEVVEAAPVTEKAVEAEPAPVETPAAVEAPVAEPVAQAEPTVDVA
QEPVPAPVEQAPAAAAVPANATGRAPNDPREVRRRQREAERLAREAAQAAAAAPAVEAAA
VVDAAPVAEASAPAEAEAAVVETAPVVEPVAEAEATSVVSEQSVSEAVEQAQPEEETPAD
KEEVKPQA
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagcctgaagagttgcgtgttgccctggtagat
ggccaaaaactctacgacctggacatcgagtccggcgcccgtgaacaaaaaaaggccaac
atctacaaaggccgcatcacccgcgttgaacccagcctcgaagccgctttcgtcgacttc
ggctccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatatttctccaag
tctcctgaaggcggccgcgtcaacatcaaggacgtgctcaaggaaggccaggaagtcatc
gtccaggtcgagaaagaagaacgcggcaacaagggcgcagccctgaccaccttcatcagc
ctggctggtcgttacctagtgctgatgccgaacaacccgcgtgccggcggcatcagccgc
cgtatcgaaggcgaagagcgcaacgaattgcgcgaggcgctgaatggcctcaacgctccg
gccgacatgggcctgatcgtgcgcactgccggcctcggccgctccagcgaagaaatgcag
tgggacctcgactacctgctgcaactgtggagcgccatcaaggaagcctccaccagccgc
cctgccccgttcctgatctaccaggaatccaacgtcatcatccgcgccatccgcgactac
ctgcgccaggacatcggcgaagtgctggtcgacagcgtcgaagcccaggaagaagcgctg
agcttcatccagcaggtgatgccgcagtacgccagtaagatcaagctgtacgaagacagc
gtgccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgtgaa
gtgaaactgccgtccggtggttccatcgtcatcgacccgaccgaagccctggtttccatc
gacatcaactcggcgcgcgccaccaagggcagcgacatcgaggaaactgcgctgcagacc
aacctggaagcggccgaggaaatcgcccgccagctgcgcctgcgcgacatcggcggcctg
atagtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtcgaagagaag
gtgcgtgaagccctggaagccgaccgcgcccgtgtacaggtcggccgcatctcgcgcttc
ggcctgctggaaatgtcccgtcagcgcctgcgtccgtccctcggcgagaccagcggcatc
gtctgcccgcgttgcaacggccagggcatcatccgcgacgtcgaatccctgtcgctggcc
atcctgcgcctgatcgaagaagaagcgctgaaggatcgcaccgccgaagtccgcgctcag
gtaccgatcccggtcgccgccttcctgctcaacgagaagcgcaactcgatcaccaagatc
gaactgcgtacccgtgcgcgtatcgtgatcctgccgaacgatcacctggaaaccccgcat
ttcgaagtgcaacgcctgcgtgacgatagcccggaagccctgagcggccagaccagctac
gaaatcgccgccactgcggaaaccgaagaaaccgctgcccagccggccgctgccacgcgc
actctggttcgccaggaagctgcgatcaaggccgcaccgcgcagcagcgccccggtcgct
gccgagcctcaagcaccgctggctccgaccaaggcgcctgaaccgagcctgttcaagggc
ctggtgaagtctctggtcagcctgttcgccggcaaggaagaagaagcccagcccgcagca
gtcgagaagaagagcaacgagcgtccgccgcgcgaagagcgccgcaacggtcgtcagcag
agccgtaaccgtggcggtcgccgcgatgacgagcgcaaacctcgtgaagagcgcgccccg
cgtgaagaacgtcaggcccgtgaaccgcgtgaagaacgccaacctcgcgaagagcgtcaa
ccgcgtgaagagcgtcaaccgcgtgaagagcgcgccccacgtgagccgcgcgaaggtcag
gaaaatcgccgtgagcgcaagccgcgcgaagaacgcgccccgcgtgaagagcgcgtgcgt
gaactgcgtgaacctatcgcagccgataccgatgccgatgctggtaacgagcaacgcgaa
gagcgtgccgagcgccagccgcgtggtgaacgtcaggagcgtcagcgtcaaccgcgtgaa
gagcgtcagccgcgtgccgagcaaaccgaggccctgcaggacgaagcactgccgaacgaa
gagcagctgcaggacgacgagcaggacagcaacgatggcgagcgtccacgtcgccgttcc
cgcggtcagcgtcgtcgcagcaatcgtcgcgaacgtcagcgtgatgccgatggcaacctg
atcgagagcgccgagaacagcgaagctgcaggcaacgaagctcaagccgccgctccagct
gccgtagccactgctgcagccgtggttgcagaaagcgttgatagcagcgaagccgttgcc
agcgaggctccggtcagcgaagccccggtcgtcgaagcaccggctgctcaggttgaagaa
gcccctgctgctcaaccggtcgaggcgcaagccgaggctgctgtgagtgaagtggtcgaa
gccgctccggtcacagagaaagcagttgaggcagaaccggccccagtcgaaacccctgct
gccgttgaagcgccagttgccgaaccggtcgctcaagctgagccgactgtcgacgtcgcc
caggagcctgttccggcaccggtcgagcaagcacctgctgccgcagcggttccggcaaat
gccactggccgtgccccgaacgacccgcgcgaagtgcgtcgtcgtcagcgtgaagctgag
cgcctggcgcgcgaagctgcacaggccgccgctgcagccccggctgtagaggctgccgca
gtagtcgacgctgctccggtcgctgaagcaagcgccccggcagaagccgaagccgctgta
gtcgaaacagcgcctgtagtcgagccggtcgctgaagccgaagccacctctgtcgtcagc
gagcaaagcgtgagcgaagcggtagagcaagcgcagccggaagaagaaacgccagccgac
aaggaggaggtcaagcctcaggcttga
DBGET
integrated database retrieval system
