Ectopseudomonas alcaliphila: UYA_09385
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Entry
UYA_09385 CDS
T06680
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pall
Ectopseudomonas alcaliphila
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pall03016
]
UYA_09385
Enzymes [BR:
pall01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
UYA_09385
Transfer RNA biogenesis [BR:
pall03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
UYA_09385
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
APU29931
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All DBs
Position
2013290..2014423
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AA seq
377 aa
AA seq
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MANDIHWILDDASLAEHCAAWQALPFVALDTEFMRVDTFYPIAGLLQVSGGDGAYLIDPL
RISDWRPFAALLEAPTVVKVLHSCSEDLEVFLRLTGSLPAPLFDTQLAAGYLNLGFSMGY
SRLVQALLDIELPKGETRSDWLQRPLSELQVRYAAEDVSHLVEVYRALMARLAPQKVEWI
LEDGAELVANLGREVAPEDAWRDAKLAWKLSRQQQAVLRALCAWREREARARNQPRNRIL
REHSLWPLARTQPDNLVALARIEDMHPKTVRQDGETLLQLIREAAALPPEQWPEALPEPL
PIEASALLKKLRAVGQREGERLDIVPELMLRKKTLEALLKSGYPNGPYQLPDSLRGWRRE
LMGQALLDCLAAEGESA
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggctaacgacattcactggattctcgacgacgccagcctggccgagcattgcgctgcc
tggcaggcgctgcccttcgtcgcgttggacaccgagttcatgcgcgtcgacaccttctat
cccatcgccgggttgctgcaggtcagcggtggcgacggcgcctacctgatcgacccgctg
cgcatcagcgactggcggccgttcgccgcgctgctcgaagcgccgaccgtggtcaaggtg
ctgcattcatgcagtgaggacctggaggtctttctacgcctgaccggcagcctgccggcg
ccgctgttcgacacgcaattagcggctggttacctcaatctcggtttctccatgggctac
tcgcgcctggtgcaggcgctgctcgatatcgagctgcccaagggagaaacccgctccgat
tggctgcagcggccactgtccgaactgcaggtgcgttacgccgccgaggacgtctcgcat
ctcgtcgaggtgtatcgcgccctgatggcccgcctggcgccgcagaaggtcgagtggatt
ctggaggacggtgccgagctggtcgccaatcttggtcgtgaagtcgctccggaagatgcc
tggcgcgatgccaagctggcctggaaactctcgcgccagcagcaggccgtgctgcgcgcg
ctgtgcgcctggcgcgagcgcgaggcgcgcgcgcgcaaccagccacgcaatcgcatcctg
cgcgagcattcgttgtggccgctggcccgtacccagccagataacctggtggcgctggcg
cgcatcgaagacatgcacccgaaaaccgtgcgtcaggacggagagacactgctgcagctg
attcgcgaggctgcggcgctgccgcccgagcagtggcccgaagccttgcccgagccgttg
ccaatcgaagcctctgcgctgttgaagaaactgcgcgctgtcggccagcgcgagggcgag
cgcctggatatcgtgcccgagctgatgctgcgcaagaaaaccctggaagccctgctgaaa
agcggctatcccaatggtccttatcaattgcccgactccctgcgtggctggcgccgggag
ttgatgggccaggcgctgcttgactgcctggccgctgaaggagaatccgcgtga
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