Ectopseudomonas alcaliphila: UYA_09690
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Entry
UYA_09690 CDS
T06680
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pall
Ectopseudomonas alcaliphila
Pathway
pall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UYA_09690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pall03019
]
UYA_09690
03400 DNA repair and recombination proteins [BR:
pall03400
]
UYA_09690
Enzymes [BR:
pall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UYA_09690
Messenger RNA biogenesis [BR:
pall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UYA_09690
DNA repair and recombination proteins [BR:
pall03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UYA_09690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Sigma70_r4_2
ResIII
HTH_23
GerE
HTH_29
Transposase_mut
Motif
Other DBs
NCBI-ProteinID:
APU29990
LinkDB
All DBs
Position
2105077..2107209
Genome browser
AA seq
710 aa
AA seq
DB search
MLDHAMRILKDVFGYDAFRGNQAAIIERVAGGGDALVLMPTGGGKSLCFQVPALMREGLA
VVVSPLIALMDDQVATLDELGVAAVALNSTLSPDEQREIADRIRRGQIKMLYLAPERLVQ
PRMLSFLQGLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPNVPRIALTATADKRT
REEIVQRLHLDNAERFLSSFDRPNIFYRIQPKDQPRKQLLGFLAARKGDAGIVYCLSRKK
VEEVADFLSSQGFPALPYHAGLPNELRAFNQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
CHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRIEQHK
LDAMLALCEETRCRRQALLAYFDEELPNPCGHCDNCIDGVETWDATEPARQALSAVYRSG
QRYGVGHLVDILLGRDNEKIRAAGHQHLAVFGVGKGFSEVEWRTLFRQLVARGLADVDLD
GFGGLRLSETCRPLLRGEVSLQLRREPKPAQAAKASSSAASQLVRGHEREMWEALRSLRR
KLAEEHSVPPYVIFPDATLLEMLRSQPSSLSDMAEVSGVGARKLERYGQAFLEVLNGSGA
DDTPAPVADLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEAIGQQQLTLEQALDLP
EELLGEIQETFLDGEGELPAVSEVAPLFAGRVDEAVLYCVRAALQAEFEV
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccacgccatgcgcattctcaaagacgttttcggctacgacgcctttcgcggc
aaccaggccgcgatcatcgagcgcgtggccggcggcggcgatgccctggtgttgatgcct
accggcggcggcaagtcgctgtgcttccaggtgccggcgctgatgcgcgagggcctggca
gtggtggtgtcgccgttgatcgcgctgatggacgatcaggtggccaccctcgacgagttg
ggtgtggcagccgtggcgctgaattccaccttgagccctgacgagcagcgcgagattgcc
gaccgtatccgtcgcgggcagatcaagatgctctatctggcgcccgagcgcctggtgcag
ccgcgcatgctgagcttcctgcagggcctggatatcgccctgttcgccatcgacgaagcg
cactgcgtgtcgcaatggggccatgatttccggcctgagtacctgcagctcggtcagctt
gctgagctctttcccaatgtgccgcgcatcgccctgaccgccaccgcggacaaacgtacc
cgtgaggaaatcgtccagcgtctgcacctggacaacgccgagcgctttctgtcgagcttc
gaccggccgaacatcttctaccgcatccagcccaaggatcagccgcgcaagcagctgctg
ggttttctcgccgcgcgcaagggtgatgccggtatcgtctactgcctgtcgcgcaagaag
gtcgaggaggttgccgactttctcagcagtcagggcttcccggctttgccctatcacgcc
ggcctgcccaacgaattgcgtgccttcaatcagaagcgctttctcaatgaggaaggcctg
atcatggtggcgaccatcgccttcggcatgggcatcgacaagcccaacgtgcgcttcgtc
tgccacatggatctacccaagtcgctggaggcctactaccaggagaccggtcgcgccggt
cgtgacggtctgccggccgatgcctggatggcttacggcctgcaggacgtgatcttcctc
aagcagatgctcaacaattccgaaggcgatgagcgccacaagcgcatcgagcagcacaag
ctcgacgccatgctcgccctgtgcgaagagacacgctgccgccgtcaggcgctgctggcc
tacttcgatgaagaattacccaacccttgcgggcactgcgacaactgcatcgatggcgtc
gagacctgggatgccaccgagcctgcgcgccaggcgctgtcggctgtctatcgcagcggc
cagcgctatggtgtcggccatctggtggatattctgctcggccgagacaacgagaaaatt
cgcgccgccggccatcagcacctggcggtgttcggcgttggcaagggcttttccgaggtc
gagtggcgaaccctgtttcgccagttggtcgcccgcggtctggccgatgtcgatctggac
ggctttggtggtctgcgtctgagtgagacctgcaggccgctgctgcgcggtgaggtcagc
ctgcaactgcgccgtgagcccaagccggcgcaggcggccaaggcctccagcagcgccgcc
agtcaactggtgcgtggccatgagcgggaaatgtgggaggcgctgcgcagtctgcgccgc
aagttggccgaggaacacagcgtaccgccgtacgtgatcttccccgatgccacgctgctg
gaaatgttgcgcagccagcccagctcgctgagcgatatggccgaggtcagcggcgttggc
gcgcgcaagctggagcgctatggccaggccttcctggaggtactcaatggtagcggcgcg
gatgacacgccggcgccggtggccgatctgcgtcacgagttggtcagcctggcccgcgcc
ggaatgacacccgcacagattgccggccagcttaactgcagcgagaagaacgtttacagc
ctgctggccgaggccatcggccagcaacaactgacgctggaacaggcgctggatcttcct
gaggaactgctgggcgagattcaggagaccttcctcgacggcgagggcgagctgccggcc
gtgagtgaagtcgcgccgctgttcgccggtcgcgtcgacgaggccgtgctctactgcgtg
cgtgcggcgctgcaggccgagttcgaggtctaa
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