Ectopseudomonas alcaliphila: UYA_13960
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Entry
UYA_13960 CDS
T06680
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pall
Ectopseudomonas alcaliphila
Pathway
pall03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
UYA_13960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pall03400
]
UYA_13960
Enzymes [BR:
pall01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
UYA_13960
DNA repair and recombination proteins [BR:
pall03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
UYA_13960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Helicase_RecD
Viral_helicase1
AAA_22
SH3_13
UvrD-helicase
AAA_16
TraI_hel_assoc_N
SLFN-g3_helicase
nSTAND3
AAA_28
AAA_17
Mg_chelatase
DEAD
NTPase_1
ATPase
PhoH
AAA_7
AAA_29
T2SSE
AAA_25
TrwB_AAD_bind
NACHT
AAA_5
GvpD_P-loop
AAA_24
Motif
Other DBs
NCBI-ProteinID:
APU30764
LinkDB
All DBs
Position
complement(3037118..3039148)
Genome browser
AA seq
676 aa
AA seq
DB search
MSAMLAPALRDRAELFALLSVWSERGWLRELDRALAQLFAELDADASPLLLLGAALASHQ
LGQGHVCLDLAATLANPDFTLSLPPEGEDAEEAMILPSQVLAGLSLESWLAACAGSALLE
SEGAPLVFSGACLYMRRYWNYERRVAGDIARRLQASAAAPTDLAARLASLFPEPLMVDGQ
RLTDWQKLACAMAAQGRFTLITGGPGTGKTTTVVRLLALLQEAAMATGEPLRLSLAAPTG
KAAARLTESIGAQVQSLALDERVREQIPTLVTTLHRLLGSRPGSRHFRHDAANPLPLDVL
VVDEASMIDLEMMASLLGALPAHARLILLGDKDQLASVEAGAVLGDLCREAESGGYSEAT
RAWLESQTGERLEDPALVPGDKALAQHIVMLRHSRRFGSGSGIGRLARAVNLGDAQSARA
TLATGAHDLYVLRLSGEQDRALERLLIEGQGGGEPRPQGYAHYLQMMQAERPAPDADSQA
WDRWAGRVLAAFDQFQLLCAVRKGTWGVEALNERIAAALVKRGLLEQSHGWYEGRPVLVT
RNDYSLGLMNGDIGIALRLPEPPESLGAPVREVLRVVFPRNDGSGALRHILPSRLSAVET
VFAMTVHKSQGSEFAHCALILPDNLNPVLTKELVYTGITRARHWFSLVESRAGIFEQAVQ
RRVARRSGLREALEKQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgatgctggcgccggcgctgcgtgatcgcgccgaactctttgccctgctttct
gtatggagcgagcgtggctggctgcgcgagctggatcgggcgctggcgcagttgttcgcc
gagctggacgcggacgcttcgcccttgctgctgctcggcgccgcactggccagtcaccag
ctgggtcaggggcatgtctgcctggacctggcggccacgctggccaatccggatttcacc
ctgtctctgccaccggagggcgaggacgcagaagaggcgatgatcctgccgtcgcaggtg
ctggccgggctcagcctggagtcctggctggcggcctgtgccggcagcgcgctgctggag
tccgaaggtgctccgctggtgttcagcggcgcctgtctatatatgaggcgttactggaac
tacgagcgccgggtggctggcgatatcgctcggcgtctgcaggcgagcgccgcggccccg
accgatctggctgcgcgcctggcttcactctttcccgaaccgctgatggtggacggccag
cgcctcaccgactggcagaagctggcttgtgccatggcggcgcaagggcgcttcaccctg
attaccggtgggccgggaaccggtaagacaaccacagtggtgcgcctgctggcgctgttg
caggaggcggccatggccactggcgagcccctgcgcctgagtctggcggcgcccaccggc
aaagcggccgcgcggctgaccgaatccatcggcgcgcaggtgcagtccctggcgctggac
gagcgagtgcgtgagcagattccaaccctggtgacgacgctgcatcgcctgctgggcagt
cgtcctggcagccgtcatttccgtcacgatgccgccaaccccttgccactggatgtgctg
gtggtcgacgaagcctcgatgatcgacctggaaatgatggccagcctgctgggcgcgttg
ccggcgcatgcgcgtctgattctgctgggcgacaaggaccaactggcgtcggtggaggcc
ggtgcggtactgggggacctgtgccgagaggcggagagcggtggctacagtgaggcgacg
cgtgcctggctggaaagccagacgggcgaacggctggaagatccggcgttggtgcccggt
gacaaggctctggcgcagcatatagtcatgctgcgtcactcgcgtcgtttcggcagtggt
tcgggtatcgggcgtctggcgcgtgcggtgaaccttggcgatgcgcagtcggcccgcgcg
actctggcaaccggtgcacatgatttgtacgtgttgcgtttgtcaggtgagcaggatcgt
gcgctggagcgactattaatagaggggcagggcggcggcgagcctcgtccgcaggggtat
gcgcattatctgcagatgatgcaggcggagcgccctgctccagatgccgactcccaggcc
tgggatcgttgggccggtcgcgtcctggcagcgttcgatcagttccagttgctctgtgcg
gttcgtaaaggtacatggggcgtggaagcgctcaacgaacgtattgccgcagcgctggta
aagcggggcctgcttgagcagtcgcatggctggtatgaaggtcggcccgtgctggtaacg
cgcaacgactacagcctggggctgatgaacggcgatatcggcatcgcgctgcgtctgccg
gagccgccggagtctctaggcgcacctgtgcgcgaggtgttacgagtggtattcccgcgc
aacgacggcagcggcgccttgcgacatatcctgcccagccgtctgagtgcggtggagacc
gtgttcgccatgaccgtgcacaagtcgcagggctcggagttcgcccattgcgcgctgatc
ctgccagataacctcaacccggtactgaccaaggagctggtctacaccggtatcacccgg
gctcgtcactggttcagcctggtcgaaagccgagcgggcatcttcgagcaggctgtgcag
cggcgcgtggcgagacgcagtggcctgcgcgaggcgctggaaaagcaataa
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