Ectopseudomonas alcaliphila: UYA_20830
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Entry
UYA_20830 CDS
T06680
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pall
Ectopseudomonas alcaliphila
Pathway
pall03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UYA_20830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pall03021
]
UYA_20830
03400 DNA repair and recombination proteins [BR:
pall03400
]
UYA_20830
Enzymes [BR:
pall01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UYA_20830
Transcription machinery [BR:
pall03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UYA_20830
DNA repair and recombination proteins [BR:
pall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UYA_20830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
APU32057
LinkDB
All DBs
Position
complement(4531342..4535541)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLDHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFKDSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAVNAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINEVIKDRDGSITKNTRIVDTTVGRALLFQIVPAGLSYDVVNQSMKKKA
ISKLINQCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEPVVDREGKTVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIAKDVFKPGTEDVIVPAGTLIDEQWVEFIELNSVDEVVVRSPITCETRFGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGAIRL
HNLKHVERVDGNLVAVSRSGELAVADEFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDPKDRPAAGKDIRPAIKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAQIAVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVSESGDSSFIKGDQMELTQVLGENERLAEEDKFVAKYTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcagatcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtaccttcaagccagagcgcgacggcctgttctgcgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggtaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtggccctggccaaggttcgccgtgag
cgcatggcgcacatcgaactggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgacatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgacccgggcatgaccactctcgagaagggtcagctgctg
aacgacgagcagtacttcgaagcccttgaagagtttggtgacgacttcgacgcgcgcatg
ggcgccgaggccgttcgcgagctgctgcacgccatcgacctggatcacgagatcggccgc
ctgcgtgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ttgaagctgatggaagccttcaaggactccggcaacctgccggagtggatggtgctgacc
gttctgccggtgctgccgccggatctgcgcccgctcgttccgctcgatggtggccgtttc
gccacgtccgacctgaacgatctgtaccgccgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgcgctgctcgacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtcgctggctgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttccgtaattaccgtaggcccgacc
ctgcgcctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccggaggtttgggacgttctcgctgaagtgatccgcgaacacccc
gtcctgctcaaccgtgctccgaccctgcaccgtctgggtatccaggcgttcgagccggta
ctgatcgaaggtaaagcgatccaactgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggtgagccaatcatt
gtgccgtcgcaggacgtggtactgggtctgtactacatgacccgtgaagcggtgaacgcc
aaaggcgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagcgtccctgcacgcccgtgtgaaagtgcgtatcaacgaggtcatcaaagaccgcgac
ggcagcatcaccaagaacacccgcatcgtcgacaccaccgtcggccgtgcgctgctgttc
cagatcgtaccggccggcctgtcttacgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcaccgttggtctgaaggacaccgtgatcttc
gctgaccagctgatgtacaccggtttcgcttactcgaccatctccggtgtgtcgatcggc
gtgaacgacttcgttatcccggatgagaaggcgcgcatcatcgacgccgccaccgaggaa
gtgaaggaaatcgaatcgcagtacgcctccggcctggttacccagggcgagaagtacaac
aaggtgatcgacctctggtcgaaggccaacgatgaagtgtccaaggcgatgatggccaac
ctctcgaaagagccggttgtcgatcgcgaaggcaagaccgtcgagcaggagtccttcaac
tccatgtacatgatggcggactccggtgcgcgtggtagcgccgcgcagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgaaacgccgatcacc
gcgaacttccgcgaaggtctgtcggttctgcagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaagaccgcgaactccggttacctgactcgtcgtctg
gtcgacgtggcgcaggatctggtggtgaccgagatcgattgcggcaccgagcacggtctg
ctgatgacgccgcacatcgaaggcggcgacgttgtcgagccgttgggtgagcgcgtactg
ggtcgagtgatcgccaaggacgtgttcaagcctggcaccgaggacgtcatcgttccggcc
ggtaccctgatcgacgagcagtgggtcgagttcatcgagctgaacagcgtcgacgaagtg
gtcgtgcgttcgccgatcacctgcgaaacccgcttcggcatctgcgccaagtgctacggc
cgcgatctggcccgtggtcaccaggtcaacatcggtgaggcggtcggcgttatcgctgcc
cagtccattggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgct
gcaagccgtacttcggctgccgacagcgtccaggtgaagaacggtggtgcgatccgtctg
cacaacctcaagcacgtcgagcgcgtggacggcaacctggtggcggtgtcccgctccggc
gagctggctgtggctgacgagttcggtcgcgagcgcgagcgctacaagctgccgtacggc
gccgtgatttcggtgaaggaaggcgacaaggtcgacgctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtgaccgaaatgaagggtaccgtgaccttcgtcggcatg
gaggagggcatcaccatcaagcgccagaccgacgaactgaccggtctgaccaatatcgag
gttctcgatccgaaggatcgtccggctgctggcaaggacattcgtccggccatcaagatg
gtcgatgccaacggcaaggaactgctgctgccgggtaccgacgttcccgctcagtacttc
ctgcctgccaacgccctggtcggtgtggctgacggtgcgcagatcgcggtcggtgacgtt
atcgcccgtatcccgcaagagacctcgaagacccgcgacatcaccggtggtctgccgcgc
gttgccgatctgttcgaagcccgtcgtccgaaggaagcttcgatcttggcggaaatcagc
ggcaccatttcgttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgacc
gatggtagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgagcaagtgaaccgcggcgaagttatctccgacggtccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgaagtcagcgagtccggcgattcgtccttcatcaagggcgatcagatg
gagctcacccaggttctgggcgagaacgagcgtctggccgaagaggacaagttcgtcgcc
aagtacacccgcgtactgctgggtatcaccaaggcgtcgctgtccaccgagtcgttcatc
tcggcagcgtccttccaggaaaccactcgcgtcctcaccgaggcggcggttactggcaag
cgtgactacctgcgtggtctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctatcacagcgagcgcaagcgcaagcgtgatgcagacaagccggtacga
gtcagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggaaattga
DBGET
integrated database retrieval system
