Paludihabitans sp. MB14-C6: RBG61_00300
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Entry
RBG61_00300 CDS
T09321
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
palm
Paludihabitans sp. MB14-C6
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
palm03009
]
RBG61_00300 (rlmD)
Enzymes [BR:
palm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RBG61_00300 (rlmD)
Ribosome biogenesis [BR:
palm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RBG61_00300 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
Cons_hypoth95
Methyltransf_25
MTS
TRM5-TYW2_MTfase
PrmA
N6_N4_Mtase
UPF0020
PCMT
Methyltransf_11
Methyltransf_4
DOT1
Methyltransf_32
RrnaAD
YtxC
Methyltransf_12
Ubie_methyltran
Methyltrans_SAM
Methyltransf_5
Phosducin
Motif
Other DBs
NCBI-ProteinID:
WMJ23133
LinkDB
All DBs
Position
65566..66942
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AA seq
458 aa
AA seq
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MNIVKNECYEIEITSVTSEGNGVGKIDGFALFVPETAIGDIVLVKVLKVLKSYGFGKVVS
LLKPSANRIKEDCACYTQCGGCSYRHISYDAELSLKEDLVVNAFQRLGNVDVACTNIIGS
ERINSYRNKAQYPVGKDKDGNIISGFYAKRSHRIINSSFCKLQAEEFEQIKNTIIDFFNK
SNISIYDEQKHTGLIRHIYIRKAEATNEVMVCLVATKPNIPKMDTLIDSLNSNFANIKSV
IINVNAKQTNVILGDHCVTVYGTSYITDVICGIKIKISPLAFYQVNKLQAEVLYQTAINY
AELSKDDVLIDLYCGTGTIGLIAAHKVKQVIGIEIIPQAIENAKENAKINGIDNARFICA
DAKKATKQLLTEGVVPDVVIVDPPRKGLDQEVIDAIVQMCPRKIVMVSCNPATAARDTSL
LEQNGYKAKILTPVDMFPRTTHVETTIMMTRCGFESKK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagtaaaaaatgaatgttacgaaatagaaataacaagtgttacaagcgaagga
aatggtgttggtaaaatagatggttttgctttgtttgtaccggaaactgctattggcgat
attgtattggtcaaagtattaaaagttttaaaaagctatgggtttggaaaagttgtaagt
ctgctcaaaccatctgcaaatagaataaaagaggattgcgcttgttatacgcaatgcggc
gggtgtagttatcgccatatatcttatgatgcagaattatcacttaaagaagatttagtg
gtgaatgcatttcaacgacttggaaatgttgatgtcgcttgcacgaatattattggcagt
gaacgtatcaactcctatcgaaataaggcacaatatccagttggaaaagataaagatggt
aatattatatcaggcttttatgctaaaagaagccatagaattataaattcatctttttgt
aaattacaagcggaagagtttgaacaaataaaaaatacgattatcgactttttcaataaa
agtaatatttccatatatgatgagcaaaagcatacagggttaattcgacatatttatatt
cgcaaggcagaggctaccaatgaagtgatggtgtgtttagttgcaactaagcccaatata
cccaaaatggatacattgattgattcgcttaacagtaattttgctaatatcaaaagtgtt
ataataaatgtcaatgctaagcagacaaatgtaattcttggggatcattgcgttacagtt
tatgggacaagttatataacagatgttatttgtggaattaagattaaaatttcccctctt
gctttttatcaagtcaataaattgcaagccgaagtgttatatcaaactgcaattaactat
gcagagctttcaaaagatgatgtgcttatcgatttgtattgtgggacaggcacaataggt
ttaatcgccgctcataaagtgaaacaagtaataggcattgaaattattcctcaagcaatt
gagaatgcaaaggaaaatgcaaaaataaatggtatagataatgcaagatttatatgtgcg
gatgcgaaaaaagctacaaagcaattgttgactgaaggtgttgttcctgatgttgtaatt
gtagatccaccacgtaaaggcttagaccaagaggttattgatgcaattgtacaaatgtgt
ccacgaaagatagtgatggtgtcttgtaatccggcgactgcggcacgagatacaagttta
ctagagcaaaatgggtataaagccaaaatactcacacctgttgatatgtttccgagaacc
acgcacgttgaaacgacaataatgatgacgcgttgtggttttgagagcaaaaagtag
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