Paludihabitans sp. MB14-C6: RBG61_00770
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Entry
RBG61_00770 CDS
T09321
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
palm
Paludihabitans sp. MB14-C6
Pathway
palm00300
Lysine biosynthesis
palm00470
D-Amino acid metabolism
palm01100
Metabolic pathways
palm01110
Biosynthesis of secondary metabolites
palm01120
Microbial metabolism in diverse environments
palm01230
Biosynthesis of amino acids
Module
palm_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RBG61_00770 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RBG61_00770 (dapF)
Enzymes [BR:
palm01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
RBG61_00770 (dapF)
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Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Pro_racemase
Motif
Other DBs
NCBI-ProteinID:
WMJ23220
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All DBs
Position
175519..176376
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AA seq
285 aa
AA seq
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MELKFTKMQGCGNDYIYINCIENAATNNMKINSPESLSVLLSDRHFGVGGDGIVLILSSD
IADAKMRMFNIDGSEGKMCGNAIRCVAKYLYDNNIVNKETLTVETLAGVKKLFLTIQNGA
VSSVKVNMGNAELSPDKIPVKMQGDSIVNRQVNINNIDYAITCVSMGNPHAVVFCDDVDY
INLAEIGPLFENNSLFPERINTEFVEIVDENNFKMRVWERGSGETLACGTGACASAVAAV
LNGYCDKNTDIKVQLLGGDLVIRYTDDAVYMTGGCKKVFDGVIEI
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaaatttacgaaaatgcaaggatgcggtaatgactatatttatattaactgt
atcgagaatgctgcgacaaacaatatgaaaataaactcacctgaatctttgtcggtactt
ttatccgatcgacattttggtgtgggtggtgatggtattgtattaattttatcttctgat
atcgccgatgctaaaatgaggatgtttaatattgacggaagcgaaggtaaaatgtgtgga
aatgcaattcgttgtgttgctaagtatttatatgataataatatagtaaataaagaaaca
ttaacggttgaaacactcgctggtgttaaaaaattgtttttaactatacaaaatggagct
gtttcatctgttaaagttaatatggggaatgcagaactttctcccgataaaattcctgtt
aagatgcaaggggatagcatagtaaataggcaagttaatatcaataatattgattatgct
atcacttgcgtatctatgggaaatcctcatgcagttgtattttgcgatgatgttgattat
ataaatcttgctgaaatagggccattatttgaaaataattcgttgtttccggaaagaata
aataccgaattcgtcgaaattgttgatgaaaataatttcaaaatgcgtgtatgggaaagg
ggaagtggtgaaactcttgcttgcggtacaggtgcttgtgcttcagcagtagcagctgtt
ttaaatggttattgtgataaaaacacagatattaaagtccaactccttggtggcgatctt
gttatacgttatactgacgatgcagtgtatatgaccggaggatgtaaaaaagtttttgat
ggagtgatagaaatatga
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