Paludihabitans sp. MB14-C6: RBG61_01840
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Entry
RBG61_01840 CDS
T09321
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
palm
Paludihabitans sp. MB14-C6
Pathway
palm03420
Nucleotide excision repair
palm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBG61_01840
03430 Mismatch repair
RBG61_01840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palm03400
]
RBG61_01840
Enzymes [BR:
palm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBG61_01840
DNA repair and recombination proteins [BR:
palm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBG61_01840
MMR (mismatch excision repair)
Other MMR factors
RBG61_01840
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
DEAD
AAA_30
ResIII
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
WMJ23432
LinkDB
All DBs
Position
complement(395957..398077)
Genome browser
AA seq
706 aa
AA seq
DB search
MNIIEFLQKKHNIILNEQQQKGVLCLDKNTLLLAVPGSGKTTVLVSRIANLMVNYQINNK
QILTLTYSRETAKDMKRRFEYLFSTLALQSPSFKTIHSFCLSVLRYYSQAKNRPMPKLIT
DSDNNGLKTRLLRELYMHFNEEYLTDDLLETLDRLISYSKNMMLTMEQLTDHENEIRSFQ
KIYIEYEQYKKQNKLIDYDDMLTLTYEIFIRFPDILNVFQFHYQYINVDEAQDTSLIQHK
IIQMLAKNSMIFMVGDEDQSIYSFRGAFPKALLDFDKLYQNSSIIKMEQNFRSNFDIVSH
ANDFIKQNQQRYQKEMFCNNSNHASIQVVNLRDYADQYKKIIQYIHEYSQNKTLAVVYRN
NESAIPLIDLFYRNDIHFYIKEHKLTYFSSFVVRDIISYMLLARNGCDLKAFKQIYYKLG
LSKGIYEHVERKLCDFDSVFLCVASIQAISDGRRNQMKYYHSAFQRLYKMPPKKAIAFIM
DALGYENYIENRLNDGFTKTNAYQKISTAIHLAEDIDTIESYVDKLNDLQIQINDQINID
SKANITLTTLHSSKGLEFDTVIMLDMIKDIIPSSDAVVNQVNGQLDEIENETRLFYVGVT
RAKKKLIFYRSHFLNDVVAYPSRFIERFVNGVPLHTKKDQKKKSILKIEAPNIIGKMVMH
STFGKGIVESQNDDIITIVFQTKGVKNLSYTACINAGLLELTNKER
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcattgagtttttacaaaagaaacataatatcatattgaatgagcagcaacaa
aagggtgttttatgtctcgataaaaacacccttttgttggctgttcctggatcaggaaaa
acgactgtattggttagcagaattgcaaatttgatggtaaactatcaaataaataataag
caaatattaacgctcacttatagtagagagacagcaaaagatatgaaacgcaggtttgaa
tatttattttcaaccttagcgttacagtctccaagctttaaaactatacatagtttttgt
ttatctgtgttaagatattattctcaagcaaagaatagaccaatgccaaagctaataacg
gatagtgataataatggcttgaaaacaagattactaagagaattatatatgcattttaat
gaagaatatcttaccgatgatttgcttgaaacgttagatcgtttgattagttatagtaag
aatatgatgctcacaatggaacaattaacagatcatgaaaatgaaatacgatcctttcaa
aaaatatatattgaatatgaacaatataaaaagcaaaataagctaattgattatgatgat
atgctaacccttacatatgaaatatttattcgctttcctgatattttaaatgtttttcaa
tttcattatcagtacattaacgtcgacgaagcacaagatacttctttaatccagcataaa
attattcaaatgcttgcaaaaaacagtatgattttcatggtgggggacgaagaccaaagt
atatactcgtttagaggagcatttccaaaagcattgcttgattttgataaattatatcaa
aactcatctattattaaaatggagcaaaattttcgttctaactttgatatcgtttcacat
gcaaacgattttataaagcaaaatcaacaacgttatcaaaaagaaatgttctgcaataat
agcaatcatgcatccattcaagtagttaacctacgagattatgctgaccaatataaaaaa
ataattcagtatattcatgaatattctcaaaataaaacgcttgcagtggtctatcgaaat
aatgaatcagctataccgttaattgatttattctatagaaatgatattcatttttatatt
aaggaacataaactgacatatttttcttcatttgtagtgcgtgatatcatatcatatatg
ttattggctcgcaatgggtgcgatttaaaagcctttaaacagatatactataaattagga
ttgtctaaaggcatatatgaacatgttgagagaaagttatgtgattttgacagcgtattt
ttatgtgtagcaagcattcaagctatttctgatggtagacgtaatcaaatgaagtattat
cattcagcttttcaacgattatataaaatgcctcctaaaaaagcaattgcattcattatg
gatgcattaggctatgagaattatattgaaaatcggttaaacgatggatttacaaagaca
aatgcatatcaaaaaatcagtactgcaattcatttggctgaagatattgatacaattgaa
agctatgtagataaattgaatgatttacaaatacaaattaacgaccaaataaatatagat
tcaaaagctaacattactttgactacacttcattctagtaaaggattagaatttgataca
gtcattatgcttgatatgataaaggatattattccatcaagcgatgctgttgttaatcaa
gtaaatggccaattagacgaaattgaaaatgaaaccagattattttatgttggtgtaaca
agagccaagaaaaaattgatattctatcgttctcattttctaaatgatgtggtagcatat
ccatctagatttatagaacgctttgtaaatggtgtaccgctgcatacaaaaaaagatcaa
aagaagaaatctatcttaaagattgaagcaccgaatatcatagggaaaatggtaatgcac
tctacttttggaaaaggaattgttgaatctcaaaatgatgatattattacgattgtgttt
caaacgaagggtgtaaagaatttaagctatacagcctgcataaatgcaggtttactagaa
ttaacaaataaagagaggtaa
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