Paludihabitans sp. MB14-C6: RBG61_02130
Help
Entry
RBG61_02130 CDS
T09321
Name
(GenBank) 3'-5' exonuclease
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
palm
Paludihabitans sp. MB14-C6
Pathway
palm03420
Nucleotide excision repair
palm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBG61_02130
03430 Mismatch repair
RBG61_02130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palm03400
]
RBG61_02130
Enzymes [BR:
palm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBG61_02130
DNA repair and recombination proteins [BR:
palm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBG61_02130
MMR (mismatch excision repair)
Other MMR factors
RBG61_02130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
WMJ23490
LinkDB
All DBs
Position
complement(444464..446830)
Genome browser
AA seq
788 aa
AA seq
DB search
MQAAKQELIVLKKKILDHRFQRMNSMQKLAVFQTEGPVLILAGAGSGKTTVLVNRIAYMM
HFGNAYLNDAIPQDLTETGYAFLKEIEDKNDYDVEQLKEALNINPINPWNILAITFTNKA
ANELKERLEAMLGEAATHINAGTFHSICVRILRKEIEALGYEKSFTIYDTDDSLRVIKDC
MSELSLDDKMYPPKALLGSISRAKDSMISPDDYLKENGDDFRKKAIGNVYASYQKKLKNS
NALDFDDIIGLTVQLFMENEDVLHHYQNLYKYILVDEYQDTNHAQYQLVSLLSARHQNLC
VVGDDDQSIYKFRGATIENILSFEQEFKGATVIRLEQNYRSTQNILDAANEVIKNNAARK
GKNLWTENGSGDKITQYRAQDEVGEALFIAKEIEKNIQDGMRFGDHAILYRTNAQSATIE
RQFVKAGIPYKIVGGHKFFDRKEIKDVLAYFHIIDNAYDSVRLKRVINEPKRGIGDTTVK
NIEAIAQQLGVSMLEVMKNSADYGSLAKKSMSLIRFATMIEELYELSLTLSLDELLDELL
EKTTYLEYLKAQGKDGEPRIENIEELKSNLVKYEEENEEATLSGFLEEVSLYTDLDTVNS
SDDSVIMMTMHSAKGLEYKSVFVIGLEEGLFPSYMSSNSAEELEEERRLAYVALTRAKQK
LYLTNSAQRMLFGRTSRNLPSRFLKEIPTDLIELVDDTQKAFGYAPRPEKPKPVYKPELE
GMVGVQKQVEKATISYTIGDFVEHKMFGKGKVVSMTKMSNDTLVEVVFDKVGTKKIMANF
AKLNKISI
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcagccaaacaagaattgatagtactaaaaaagaaaatacttgatcatagattt
caaagaatgaatagtatgcaaaaacttgctgtttttcaaacagaaggtcctgttttaatt
ttagctggagcaggtagtggaaaaactactgttttggtaaaccgaattgcatatatgatg
cattttggaaatgcatacttgaatgacgcgatcccgcaggatttaacagaaacaggatat
gcttttttaaaagaaatagaagataaaaatgattatgatgtagagcaactaaaggaagcg
ttgaacattaacccaattaacccttggaatattcttgctatcacatttacaaataaagcg
gcaaatgagctgaaagaacgattggaagcaatgttgggagaagcggcaactcatattaac
gctggcacatttcactccatttgtgtgcgtatattaagaaaagaaatagaagcattagga
tatgaaaaaagttttactatttatgatacggacgatagcttgcgtgtgattaaagattgc
atgtctgagctttctttggatgataaaatgtatcctcctaaagctttattgggcagtatt
agtagagcaaaagactctatgatttctcctgatgattacctaaaagaaaatggtgatgat
tttagaaaaaaagccattggaaatgtatatgcatcttatcagaaaaaattaaaaaactct
aatgctttagattttgatgatattatcgggttaacagtacaattatttatggaaaatgag
gatgtactccatcattatcaaaatctatataaatatattttggttgatgagtatcaggat
acgaaccatgcacaatatcaattggttagtcttttaagcgcaagacatcaaaatctttgt
gttgttggtgatgatgaccaaagtatttataaatttagaggagcaacgattgaaaatatt
ttaagttttgaacaagaatttaagggagcaacagttatccgcttagagcaaaattaccgt
tctactcaaaacattttggatgctgctaatgaagttatcaaaaataatgccgctagaaaa
ggtaagaatttgtggaccgaaaatggttcaggagataaaataacgcaatacagagcacaa
gacgaggtcggcgaagctttattcattgcaaaggaaattgaaaagaatatacaagatggt
atgcgatttggcgaccatgcaattttatatcgtaccaacgcacaatcagcaacgattgag
cgtcaatttgtaaaagctggcattccatataaaattgttggcggtcataagttctttgat
agaaaagaaattaaagatgtattagcttactttcacatcattgataatgcatacgattct
gttcgactaaaacgtgttatcaacgaacctaagcgtggaattggcgatacaacggttaag
aatattgaagccattgctcaacagcttggtgtctccatgcttgaagtaatgaagaattcc
gctgattatggatcacttgctaaaaaaagcatgagccttataagatttgcaacaatgatt
gaagagctatatgaattatctttaacgctttcactagatgagttgttagatgagttattg
gaaaaaacgacttatcttgaatatctaaaagcacaaggaaaagacggagaaccaagaata
gaaaatattgaagagctgaaatctaatcttgttaaatatgaagaagagaatgaagaagca
acactatcgggctttttggaagaggtttcattatacactgacttagatactgtaaatagt
tcagatgatagcgtaatcatgatgactatgcattcagcaaaaggtttagagtataaatct
gtgtttgttatcggtttggaagaaggattgttcccaagttacatgtcatctaacagcgct
gaagaattagaagaagagcgtcgtttggcttatgttgcattgacacgtgcaaaacaaaaa
ttatatttaaccaacagtgctcaacgtatgctgtttggtagaacaagtcgaaacttacct
tctcggtttttaaaagagattcctactgatttaattgagttagtagatgatacgcaaaaa
gcatttggctatgctccaagacctgaaaagccaaaacctgtttataaacctgaattagag
ggtatggtaggtgttcaaaaacaagtagaaaaggcaacaatttcatatacaattggtgat
tttgttgagcataagatgttcggtaaaggaaaagttgtttctatgaccaaaatgagcaac
gatactttagttgaagtagtatttgataaggtaggcacgaaaaaaataatggcaaacttt
gcaaaactgaataaaatatcaatctga
DBGET
integrated database retrieval system
