Paludihabitans sp. MB14-C6: RBG61_02930
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Entry
RBG61_02930 CDS
T09321
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
palm
Paludihabitans sp. MB14-C6
Pathway
palm03030
DNA replication
palm03430
Mismatch repair
palm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBG61_02930
03430 Mismatch repair
RBG61_02930
03440 Homologous recombination
RBG61_02930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palm03032
]
RBG61_02930
03400 DNA repair and recombination proteins [BR:
palm03400
]
RBG61_02930
Enzymes [BR:
palm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBG61_02930
DNA replication proteins [BR:
palm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBG61_02930
DNA repair and recombination proteins [BR:
palm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBG61_02930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
tRNA_anti-codon
DNA_pol3_a_NII
RNase_H_2
CDC37_C
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WMJ23638
LinkDB
All DBs
Position
complement(616356..620681)
Genome browser
AA seq
1441 aa
AA seq
DB search
MNATLSTLLGQYIKEDTIPNALWDAQVLYIDTNREQGHMAVTIRPEALLCKKDIFTFQNL
VKQTLKLKYFVINTKYHPNQFDASYFSEIITLIKTKVSIINGYFNEAKATFENKTLTIEL
KHGGIELLQKCSVETYIKQAIYNEFSFNPEVKFTGVLELDEQAAKQVIIDYTNEAEIVYE
PTVPSKTTPQKSESSSVITVRTNLSVLPFECENAELVNGKKIAEKPIPLSEVTGESGRVV
ICGEVFAKEIRYTRDNSKIILSIDITDYTGSNTLKIIDDIKKEALYEKINKGCVLLVRGD
ASYDKYDHEVTIRPYDIMKHTKILRMDTAEEKRVELHLHTIMSAMDATTKTAEVVETAYR
WGHKAIAITDHGVAQAFPDAMNAVDKIRKNGGEFKVIYGVEAYFVDNMVEVVVGNKDCSL
DDEIVVFDTETTGLSSVSERMTEIGAVKIKDGKVIDTFNTFVNPKKAIPPKITELTGITD
EMVKDAPSEAGALSAFLEFCGDAPLIAHNAPFDMGFINAATKRAGLDRSYTYLDTVPLCR
KLIPELKKHKLNIVAEHLGLGDFNHHRASDDAEMLAQIFFKLTEKLKQDYEIQNIKEINT
VVAGVDVKSAPTYHQIILVKNAVGLKNLYRLISLGHLEYYFKRPRIPKSELVKYREGLII
GSACEAGELYRAILANRPWGDLCTIAKFYDYLEIQPADNNEFLIRNGTVDSKDRIKEFNK
TIVNLGEHLNIPVVATCDVHFMDKADGVFREILLSGMKFKDASEQPPLYLRTTDEMLEEF
EYLGKEKAYEIVITNPNKIADLVDPEVRAIPRGTFTPVIEGAEEELQKITWERARSMYGD
DLPEIVSKRLDRELTSIIKHGFAVLYMIAQKLVYRSEQDGYLVGSRGSVGSSFVATMAGI
SEVNPLPPHYYCKECQYSEFIADGSVGSGYDLPEKNCPKCNIPLVREGHDIPFETFLGFN
GDKAPDIDLNFSGEYQSRAHRYTEELFGKDHVFKAGTISTVAEKTAYGFAMKYLEEKGKV
VHKAEENRLAIGCTGVKRTTGQHPGGMVVVPSNYEVYDFTPVQHPADSKESGVITTHFDF
HSLHDTILKLDELGHDVPTLYKHLEDITGIKIADVSACDAKIISLFTSTDALGVTPEQIY
SETGTFALPEMGTNFVRQMLIDAQPRCFSDLLQISGLSHGTDVWLGNAQDLIKDGTCTIS
EVIGTRDSIMTYLIYKGLEPDMAFKIMEITRKGNATKLLTEEHFKAMKEHDVPQWYVDSC
MKIKYMFPRAHAAAYVIAAVKLGWYKVYHPLAFYSAFFTVRGGDFDADSAIKGLNTVRLR
IEELKAKGNERSVKEEDTFAMLLIINEMLCRGFEFLPVDLYKSHATDYVIEDNKIRLPFT
SLKGLGGAAALNLMEASKQGKYISMDEVASRAGVSKSVIEILEQAGAFGDLPKTSQMTLF
G
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgccacactatcgaccttactcggtcaatacataaaagaggatacaataccgaat
gcattatgggatgcacaagttttatatatagatacgaatcgggagcaagggcacatggct
gtgaccattaggcctgaagctttgttatgtaaaaaagacatatttacttttcaaaacctt
gtaaaacaaacattaaaattaaaatactttgttattaatacaaaataccatccaaatcaa
ttcgatgcttcttatttttccgaaatcattacgttaattaaaacaaaagtatccatcata
aacggttactttaatgaagcaaaagcgacatttgagaataaaacattaacgattgaatta
aaacatggcggtatagaactattgcaaaagtgctctgttgaaacctatattaaacaagca
atttataatgagttttcgttcaacccggaagtgaaatttactggcgtattagaattagat
gagcaagctgcaaagcaagtgattattgattacacaaatgaggcggaaatcgtctatgag
ccaaccgttccatctaaaacaacaccacaaaaatctgaatcttcttcggtaataactgtt
agaacgaatttatctgtgttaccgtttgaatgtgaaaatgcagaattagtaaacggtaaa
aaaatagccgaaaaaccaattccactttcagaagtaactggcgaaagcggaagagttgtc
atttgcggtgaagtctttgcaaaagaaattcgttacacacgtgataattctaaaattata
ctttctattgatattacagattacacagggtcaaatacactaaaaatcatagatgatatt
aaaaaagaagcgttatatgaaaagataaacaaaggttgtgttttattagtacgaggcgac
gccagctatgataaatatgatcatgaagtaacaatccgtccttatgatataatgaaacat
actaaaattctacgtatggacaccgcagaagaaaaacgtgttgagctacatttacataca
atcatgtcagcaatggatgcaacgacaaaaaccgcagaagttgttgaaactgcataccgt
tggggacataaagctatagcaattaccgaccatggagttgcacaagcctttcctgatgct
atgaatgccgtagataaaattcgtaaaaacggcggcgaattcaaagttatttatggagta
gaagcttattttgtagataatatggttgaggtggtagtaggtaataaggattgctcattg
gatgatgaaatcgtagtttttgataccgaaaccacaggcttaagttctgtttccgaacgt
atgacggagattggagccgttaaaataaaagatggtaaagtaattgatacctttaatact
tttgttaatcctaaaaaggcaattccacctaaaataaccgaactcacaggcattaccgat
gagatggttaaagatgcgccaagtgaagctggggcattgagtgcattcttggaattttgc
ggagatgcaccgttgattgcacataatgcgccatttgacatgggctttatcaatgctgca
acaaaacgagcaggattagatagaagttatacctatttagatactgtacctttatgcaga
aagctaatacctgaattgaaaaaacataagttaaatattgttgcggagcatttaggctta
ggcgattttaatcatcatagagcatcagatgatgcagaaatgttagcccaaattttcttt
aagttaacggaaaagttaaaacaagattatgaaattcaaaatatcaaagaaatcaatacg
gttgtggccggagttgatgtaaaatcagcgccaacctatcaccaaattatattagtaaaa
aatgcagtaggcttaaagaatttatatcgtcttatttcgcttggacatttagaatattat
tttaaacgtcctcgtataccaaagagcgaattggtgaaataccgtgaaggactgattata
ggaagtgcttgtgaagcaggcgaattataccgcgcaattttagcaaaccgaccttggggc
gatttgtgtacaattgcaaagttttatgattatttggaaatccaacctgctgataataat
gagtttttgattcgtaatggtacagttgatagcaaagatagaataaaagaattcaataaa
acaattgtaaatctgggcgagcaccttaatattccggttgtagcaacttgtgacgttcat
tttatggataaagcagacggtgtatttcgtgagatcttattaagtggtatgaaatttaaa
gatgcttccgagcagccaccgttatatcttagaacaacagatgaaatgttggaggaattt
gaatacttaggaaaagaaaaggcatatgaaattgtaataacaaatccaaataaaatagca
gatttagtggatcccgaggtaagagcgatcccaagaggaacttttacccctgttatcgaa
ggggcagaggaagaacttcaaaaaatcacttgggaaagagcacgttctatgtatggcgac
gacttacctgaaattgtatcaaagcgtttagatagggagctaacttctattattaagcat
ggtttcgcagtactttatatgattgcacaaaagttggtttatcgttctgaacaagatgga
tatttagttggttcaaggggatctgttggatcttcatttgttgcaaccatggcaggtata
tctgaagtaaatccgcttccaccgcattattattgtaaagaatgtcaatacagcgaattt
attgccgatggttcggttggttcaggttatgacttgcccgaaaagaattgtccaaaatgt
aatattccattagtacgtgaaggtcatgatattccgtttgaaactttccttggctttaac
ggtgataaagcgccggatatcgacttgaatttttcgggcgaatatcaatctcgtgcacac
cgctatacagaagagttattcggtaaggatcacgtatttaaagcaggaactatttccact
gttgcagaaaaaacggcatatggttttgcaatgaaatatcttgaggaaaagggaaaagtg
gttcataaagcagaagaaaatcgacttgcaataggctgtaccggagtaaaacgtactaca
ggccagcatccgggcggcatggttgtagtcccatccaattatgaagtatatgattttaca
cctgttcagcatccagcggattcaaaagaatcgggcgtaattacaacccactttgacttc
cattctcttcatgatacaatcttaaagcttgacgagcttggccatgatgtgccgacgtta
tataaacacttagaagatataacaggaatcaaaattgctgatgtatcagcttgtgacgcg
aaaataatcagcctatttacttctaccgatgcactaggggttacccctgagcaaatctat
tctgaaacaggaacttttgcacttccagaaatgggtacaaactttgttcgtcaaatgctg
attgatgcacagccaagatgtttttctgatttgcttcagatttctggtctatcacatgga
acagacgtatggctaggaaatgcacaggatttaattaaagacggaacttgtactatttca
gaggttatcggaacacgtgacagtattatgacatatcttatctacaaaggcttggagcct
gatatggcatttaaaattatggagattactcgtaagggtaacgcaacaaagctgttaacc
gaagagcattttaaagcaatgaaagagcatgatgtcccacaatggtatgttgatagctgt
atgaaaattaaatacatgttcccaagagcccatgcagcagcatatgttattgcagcagtt
aagctcggctggtacaaggtatatcatccattagctttttactcagctttctttacagtt
cgtggtggcgactttgatgcagattctgctattaaagggctaaatacagtccgcttgcgt
attgaagagctaaaagcaaaaggaaatgagcgaagcgttaaagaagaagatacatttgct
atgttgttaattataaacgaaatgctttgtcgtggctttgaatttttaccggtagattta
tataaatctcatgcaacagactatgtgattgaagataataaaattcgattaccttttact
tcgttaaaaggccttggtggagcggctgcattaaacttaatggaagccagcaaacaaggt
aaatatatttctatggatgaggttgcttctcgagcaggtgtatcgaaatctgttattgaa
atattagaacaagcaggagcatttggagatttacctaaaaccagtcaaatgactttattc
gggtaa
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integrated database retrieval system
