Paludihabitans sp. MB14-C6: RBG61_02975
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Entry
RBG61_02975 CDS
T09321
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
palm
Paludihabitans sp. MB14-C6
Pathway
palm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBG61_02975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palm03019
]
RBG61_02975
03016 Transfer RNA biogenesis [BR:
palm03016
]
RBG61_02975
Enzymes [BR:
palm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RBG61_02975
Messenger RNA biogenesis [BR:
palm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RBG61_02975
Transfer RNA biogenesis [BR:
palm03016
]
Prokaryotic type
tRNA degradation factors
RBG61_02975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
AlphaC_N2
SPATA25
H-kinase_dim
Par3_HAL_N_term
Motif
Other DBs
NCBI-ProteinID:
WMJ23645
LinkDB
All DBs
Position
628599..630713
Genome browser
AA seq
704 aa
AA seq
DB search
MFENYRKFETTFAGRPLVVETGKTCVLSNGSCWVRYGDTVVMANVTASQKPREGVDFFPL
SVDYEEKLYAVGKIPGSFLKREGRPTENAILTSRLVDRPMRPLFPEGMRNDVSIVMTVLA
TDIDNSPEITGMIAASIAVSISDIPFNGPIGGVNVGLVNGEIVINPNRLQREITDLDLTV
AASAEKVVMIEAGAKEVPEGTMLEAIKKAHEEIKKIVAFISDIQKEIGKPKFEFEKQGVN
VDFYDAVKALVLDKVKFALDTDDKNVREERLKPIIAEIEETLGEEYADFMPTLGEVMYKL
QKYIVRNWLFEGKRVDGRQMNEIRPLASEVGLLPRVHGSGLFTRGQTQVLTIATLGPIRD
AQTLDSIDENEEKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSVDEF
PYAMRLVSEILSSNGSTSQGSICASTLALMDAGVPIKAPVAGISCGLITMEDGSWETMVD
IQGLEDFYGDMDFKVGGTHKGITAIQVDIKVDGLPMEVIAEAFEKTRKARIYILDEIMLK
AIPAPRPQVSEFAPKVIKTTIKVDKIREVIGQGGKVIQKICADCDVTIDIEDDGSVVIMG
VDQEKTKRALAIVESIANDPEVGAIYKGKVTRLMAFGAFVEIAPGKEGLVHISKLAEKRV
EKVEDVVSVDDTIFVKVIEIDQQGRINLSRKDAMADIAAKSSNN
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaattacagaaaatttgaaacaacatttgcaggcagacctttagtagtagaa
acaggtaaaacttgtgttctttctaacggttcttgctgggtacgttatggcgatactgtt
gttatggcaaacgttaccgcatcacaaaaaccaagagagggtgttgactttttccctcta
tcagttgattacgaagaaaagctttatgcggttggtaaaattcctggctcattcttaaaa
agagaaggtcgtccaactgaaaatgcaattttaacttcaagattagttgaccgcccaatg
cgtccgttattcccagaaggaatgcgaaacgatgtatcaattgttatgacggttttagct
actgatattgataactcccctgaaattacaggtatgattgctgcttctattgctgttagt
atttctgatattccttttaatggtccaatcggtggtgtaaatgttggattagtaaatggt
gaaatcgtaattaacccaaatagattacaaagagaaattactgatttagatttaactgtt
gctgcttctgctgaaaaagtggttatgattgaagccggagctaaagaagttccagaaggc
acaatgttagaagctattaaaaaagctcacgaagaaatcaagaaaattgttgctttcatt
agtgacatccaaaaagaaatcggtaaaccaaaatttgaatttgaaaaacaaggcgttaat
gttgacttctatgatgcagtaaaagctcttgttcttgataaagtaaaatttgcattagac
actgatgataaaaatgttcgtgaagagcgtttgaaaccaatcattgcagaaattgaagaa
acactaggcgaagaatatgctgactttatgccaactttaggcgaagttatgtataagctt
caaaaatatatcgttagaaactggctatttgaaggcaaacgtgttgatggacgtcaaatg
aatgaaattcgaccattagcatctgaagttggattattacctcgtgttcatggttctggt
ttatttactcgtggacaaacacaagtattaaccattgcaacattaggcccaattcgtgat
gctcaaacacttgacagcattgacgaaaatgaagaaaaacgctatatgcatcattataac
ttcccttcttactcagttggtgaaactcgtcctagcagaggacctggtcgtcgtgaaatc
ggtcacggtgcattagctgaaagagcattggttcctgtactaccttccgttgatgaattc
ccatatgctatgcgtttggtatccgaaatactatcttctaacggttctacttctcaaggc
tctatttgtgcttcaactttagctttaatggatgctggtgttccaatcaaagctcctgtt
gcaggtatttcttgcggattgattacaatggaagacggcagttgggaaactatggttgat
atccaaggactagaagatttctacggagatatggactttaaagttggtggtactcataaa
ggtattactgcaattcaagttgatataaaagtagacggtctacctatggaagttattgct
gaagcatttgaaaaaacaagaaaagcaagaatttatattttagacgaaattatgctaaaa
gcaattcctgctccaagaccacaagtttctgaatttgctccaaaagtaattaaaactaca
attaaagtagataaaattcgtgaagttatcggtcaaggcggcaaggttattcaaaaaatc
tgtgctgattgtgatgttactatcgacatcgaagatgacggttctgttgttatcatgggt
gttgaccaagaaaaaacaaaacgtgcattagctattgtagaatctattgccaatgatcct
gaagttggtgcgatttacaaaggcaaggttactcgtttaatggcatttggtgctttcgtt
gaaattgcaccgggcaaagaaggattagttcatatttctaagcttgctgaaaaacgtgta
gaaaaagtagaagacgttgtaagcgttgatgatacaatctttgttaaggtaattgaaatt
gaccaacaaggtagaattaacttatcaagaaaagatgcaatggctgacattgccgcaaaa
tcttcaaataactaa
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