Paludihabitans sp. MB14-C6: RBG61_04620
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Entry
RBG61_04620 CDS
T09321
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
palm
Paludihabitans sp. MB14-C6
Pathway
palm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBG61_04620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palm03019
]
RBG61_04620
03009 Ribosome biogenesis [BR:
palm03009
]
RBG61_04620
Enzymes [BR:
palm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBG61_04620
Messenger RNA biogenesis [BR:
palm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBG61_04620
Ribosome biogenesis [BR:
palm03009
]
Prokaryotic type
rRNA helicases
RBG61_04620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
SNF2-rel_dom
AAA_19
Cas3-like_C_2
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WMJ23957
LinkDB
All DBs
Position
975733..977415
Genome browser
AA seq
560 aa
AA seq
DB search
MNELSFQELNLTQEMQRAIDEMGFETATGIQSEAIPLIRTGADVIGRSQTGTGKTVAFSI
PALEMIDTVDSLKNSLQVLILCPTRELAQQACEEIHKLTKYMHGIRAVEVYGGVPMDRQI
VRLRKANIVIGTPGRVMDHMRRRTLKLDHLKMIILDEADEMLSMGFKEDIETILQDTPEQ
RQTILFSATMPPAILALTKQFQTDPQIVEINKKQVTLNNIEQLYIDAPMGRKMDALNLML
RYYDPKLAMIFCNTKRMVDEITEYLNKNGFAAEGLHGDMKQSQRTKVMDSFKFGKTAILV
ATDVAARGIDVNNIDYVINYDIPQNTEYYVHRIGRTGRAGKSGIAITICSGRRQVYTLRD
IARSVKSEIKLVDIPSTTDIHQKSLSTNLSLVEQELEKEISDVYVQMVNDLLEKGHTLPE
IAAAALQMQFDNQMAEIAEIKSANRGNTRDVGGNYGKIVINIGRDSRVAPNHIVAAISER
TNLSGNEIGKIEIFDDKTIVSIPSSHIEEVLDGMVGCKICGKPTVSSLMEGKPRYPRKNG
SNNNRGGRKPDYRKKPRYNK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaattatcctttcaagaattaaatttgacacaagaaatgcagcgcgcaattgac
gaaatgggatttgaaaccgcaacaggtattcaatctgaggcaattccactcattcgaaca
ggcgccgacgtaattgggcgttcacaaacaggaacaggaaaaacagtagctttttcaatt
cctgcattagaaatgattgatacagttgatagcttaaaaaactcgcttcaagtattgatt
ctttgccctacaagagagcttgctcaacaagcttgcgaagaaattcataaactaacaaaa
tatatgcatggtatacgtgcagttgaagtatatggcggcgttccaatggaccgacaaatt
gtacgtttaagaaaagcgaacattgttattggtactccaggacgtgttatggaccatatg
cgtagaagaacgttaaaactagatcatttgaaaatgattattttagatgaagcagacgaa
atgctaagcatgggatttaaagaggatattgaaacaattctacaagacactcctgagcaa
cgtcaaaccattctgttttctgcaactatgccacctgcaattttagcattaacaaaacaa
tttcaaacagatcctcaaattgtagaaatcaataaaaagcaagtaacacttaataatatt
gagcagttatacattgatgcaccaatgggcagaaaaatggatgccttaaacctaatgctt
cgttactatgatccaaaacttgcaatgattttctgtaatacaaaacgtatggtggatgaa
attacagaatatctgaataagaacgggtttgctgcagaaggcttacatggtgacatgaag
caatctcaacgtactaaagttatggattcatttaaatttggaaaaactgcaatccttgtt
gctacagatgtggcggctcgtggtattgatgtaaacaatattgattacgtaattaactat
gatattccgcaaaatacagaatactatgttcatcgtattggaagaacaggtcgtgccggt
aaatctggtattgctattactatctgtagtggccgtcgacaagtgtatacattacgagac
attgctcgttctgtaaaatctgaaatcaaattagttgatattccttctactaccgacatt
catcaaaagagcttatctacaaatttatctttagttgagcaagagttagaaaaagaaata
tctgacgtatatgttcaaatggtgaatgacctattagaaaaaggacacactttacctgaa
atagctgctgctgcactacaaatgcaatttgacaatcaaatggctgaaattgctgagatt
aaatcagcaaatagaggaaatacaagagatgttggcggaaactatggcaagatagtcata
aacatcggtagagatagccgtgtagctccaaaccacattgttgccgctatttctgaacgt
actaacctatctggaaatgaaatcggtaaaattgaaatctttgatgacaaaacgattgtt
tctatcccatcttcacatattgaagaagttcttgatggaatggttggctgtaaaatttgt
ggcaaaccaacagtatcttctttaatggaaggtaaaccacgttaccctcgcaaaaatgga
agcaacaataacagaggcggaagaaaaccggactacagaaaaaagccaagatataataaa
taa
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