Paludihabitans sp. MB14-C6: RBG61_05455
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Entry
RBG61_05455 CDS
T09321
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
palm
Paludihabitans sp. MB14-C6
Pathway
palm00300
Lysine biosynthesis
palm00470
D-Amino acid metabolism
palm01100
Metabolic pathways
palm01110
Biosynthesis of secondary metabolites
palm01120
Microbial metabolism in diverse environments
palm01230
Biosynthesis of amino acids
Module
palm_M00526
Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
palm_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RBG61_05455
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RBG61_05455
Enzymes [BR:
palm01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
RBG61_05455
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Motif
Other DBs
NCBI-ProteinID:
WMJ24111
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All DBs
Position
1154671..1155981
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AA seq
436 aa
AA seq
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MSFLNHYSKIDSATIATVAKEYGTPVYLYDENTIREKCQMVLSMPNAFGLTVRYAMKANS
NRTLLQTIHQCGLCIDASSLNEVRRAHLAGIPYQDIILTTQEIPENDDRIDLEQMILQGL
KYNVCSLRQLYLIGDFAKANKINLSIRVHPGVGSGESASRNTGDNYSCFGIHLSDIGQAL
DFAKEKGILFTQVHVHIGSGADPLMWRQNIDLELDIIDRYFPDATTVSFGGGLKEARMPY
EIGADVNELGSYAKQQIEAFYQRTNRKLKMEIEPGTYIVANCGYAITKVIDKKRTGNDGF
NFIIANGGMEINARPIMYGSLHPFYMVSEHGKLLSSEFDINNIAQSDYEAVIVGRCCESG
DSQSLDDNDTSIPRKMIEPNVGDYFVIGGTGAYCSSMTPFNYNSHAQIPEVLFTSENTLQ
LIRKRQTLNQIVENEI
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcttaaatcactatagcaaaattgactctgctacaatagcaactgttgcaaaa
gaatatggtactccagtatatttatatgatgaaaataccattcgagaaaaatgccaaatg
gtattatctatgccaaatgcatttggtttgacggttcgttatgcaatgaaagcaaactca
aatagaacactactacaaacaatccatcaatgtgggctttgcattgatgccagctcatta
aatgaggttcgccgtgcacaccttgcaggaattccctatcaagatattattttaacaact
caagaaattcctgaaaatgatgatagaattgatttagaacaaatgatacttcaaggcttg
aaatataatgtgtgttccctacgtcagctttatttgatcggagattttgcaaaagcaaac
aagattaacttatcgattcgtgtgcatccaggtgttggatcaggagagtccgcaagtaga
aacaccggagataactattcttgctttggaattcatctttctgatattggacaagctcta
gattttgctaaagaaaaaggtattctatttacacaggttcacgttcatattggctcagga
gctgatcctctcatgtggcgacagaatattgacttagaattagatattattgatcgatac
ttccccgatgccactacagtcagctttggagggggcttaaaagaagcacgtatgccatat
gaaatcggtgctgatgttaatgagcttggaagctatgcaaagcagcaaatagaagctttt
tatcaaagaaccaatcgtaaattaaaaatggaaatcgaaccaggaacctatatcgttgca
aactgcggctatgccattacaaaagtaatcgataaaaagcgtacgggcaacgacggattt
aacttcattattgccaacggtggtatggaaattaacgctcgtcctattatgtatggttca
ctacatccgttttatatggtttctgaacatggtaagcttttatcttctgaatttgatatc
aataatattgcacaatctgactatgaagctgtaattgttggcagatgctgtgaaagcggt
gattcccaaagcttagatgataacgatacgagtataccaagaaagatgatagagcctaat
gtcggcgattactttgtaatcggtggaacaggtgcatattgctcttctatgacaccattt
aattataattctcatgcgcaaattcctgaggttttgtttacttctgaaaatacgttacag
ttgattcgaaaaagacaaacactaaatcaaatagtggaaaacgaaatataa
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